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PI0013862 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013862
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionLysM domain-containing protein
Genome locationchr04:2419503..2420191
RNA-Seq ExpressionPI0013862
SyntenyPI0013862
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG9449161.1 hypothetical protein H6P81_009126 [Aristolochia fimbriata]8.9e-1450.55Show/hide
Query:  MAKATISIAICLLAFSLLIFSIS-VKGR----EVVVEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCV
        MAKA++ + + +L  SL++F+IS  +GR    +  + +A   L+CN A+GV+ GDTCF +A+AF L+T+ FN +NPNLNC++LFVGQWLCV
Subjt:  MAKATISIAICLLAFSLLIFSIS-VKGR----EVVVEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCV

KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]1.8e-3587.37Show/hide
Query:  MAKATISIAICLLAFSLLIFSISVKG----REVVVEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
        MAKATISIAI LLA SLLIF+ISVKG    REVVVEEASLELQCN+AYGVKSGDTCFA+AQAFKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Subjt:  MAKATISIAICLLAFSLLIFSISVKG----REVVVEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]6.1e-2366.32Show/hide
Query:  MAKATI--SIAICLLAFSLLIFSISVKGREVV---VEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFL
        MAKA I  S  I LLAFSLLIFSISV+ R      V EA LELQCN+ YGVK+GDTCF L Q FK++T HF+FINPNLNC+ LF+GQWLC++A L
Subjt:  MAKATI--SIAICLLAFSLLIFSISVKGREVV---VEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFL

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]2.7e-3489.01Show/hide
Query:  MAKATISIAICLLAFSLLIFSISVKGREVVVEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
        MAKATI IAI LLAF LLIFSISVKG EVV  E SLELQCN+AYGVKSGDTCFALA  FKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
Subjt:  MAKATISIAICLLAFSLLIFSISVKGREVVVEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]3.1e-3590.11Show/hide
Query:  MAKATISIAICLLAFSLLIFSISVKGREVVVEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
        MAKATISIAI LLA SLLIF+ISVKG EVVVEEASLELQCN+AYGVKSGDTCFA+AQAFKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Subjt:  MAKATISIAICLLAFSLLIFSISVKGREVVVEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein3.0e-2366.32Show/hide
Query:  MAKATI--SIAICLLAFSLLIFSISVKGREVV---VEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFL
        MAKA I  S  I LLAFSLLIFSISV+ R      V EA LELQCN+ YGVK+GDTCF L Q FK++T HF+FINPNLNC+ LF+GQWLC++A L
Subjt:  MAKATI--SIAICLLAFSLLIFSISVKGREVV---VEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFL

A0A0A0KLD2 LysM domain-containing protein8.9e-3687.37Show/hide
Query:  MAKATISIAICLLAFSLLIFSISVKG----REVVVEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
        MAKATISIAI LLA SLLIF+ISVKG    REVVVEEASLELQCN+AYGVKSGDTCFA+AQAFKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Subjt:  MAKATISIAICLLAFSLLIFSISVKG----REVVVEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like1.3e-3489.01Show/hide
Query:  MAKATISIAICLLAFSLLIFSISVKGREVVVEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
        MAKATI IAI LLAF LLIFSISVKG EVV  E SLELQCN+AYGVKSGDTCFALA  FKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
Subjt:  MAKATISIAICLLAFSLLIFSISVKGREVVVEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT

A0A6J5X2L6 LysM domain-containing protein1.3e-1366.67Show/hide
Query:  LQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
        L+C  AYGVK+GDTCF +AQAF L T+ F+ INPNLNC+ALFVGQW+C+N  L+
Subjt:  LQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT

M5WNV7 LysM domain-containing protein2.1e-1364.81Show/hide
Query:  LQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
        L+C   YGVKSGDTCF +AQ F L T+ F+ INPNLNC+ALFVGQW+C+N  L+
Subjt:  LQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAGGCTACCATCTCAATTGCTATTTGCCTATTGGCTTTCTCTCTTCTCATTTTCTCTATTTCTGTGAAAGGTCGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGA
GTTACAATGCAACAGAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCACTTGCTCAGGCATTCAAGCTCTCCACTGACCACTTCAATTTTATCAATCCAAATCTCA
ATTGCTCTGCTCTCTTTGTTGGCCAGTGGCTCTGCGTCAATGCCTTCCTTACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAGGCTACCATCTCAATTGCTATTTGCCTATTGGCTTTCTCTCTTCTCATTTTCTCTATTTCTGTGAAAGGTCGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGA
GTTACAATGCAACAGAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCACTTGCTCAGGCATTCAAGCTCTCCACTGACCACTTCAATTTTATCAATCCAAATCTCA
ATTGCTCTGCTCTCTTTGTTGGCCAGTGGCTCTGCGTCAATGCCTTCCTTACCTAA
Protein sequenceShow/hide protein sequence
MAKATISIAICLLAFSLLIFSISVKGREVVVEEASLELQCNRAYGVKSGDTCFALAQAFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT