; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0013869 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013869
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr08:192451..198005
RNA-Seq ExpressionPI0013869
SyntenyPI0013869
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.3e-5766.29Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGN+NQ+ TQA P+S++QG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSSPDL-LIDESKKKEKNKENNASSPSSKDEVS
        T AISK++GKGKLPAQPD+ANVSAISLRSGKIL TP ++EK  +S  L L  +++ KE+  E N S  +SK++ S
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSSPDL-LIDESKKKEKNKENNASSPSSKDEVS

KAA0038454.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.3e-5766.29Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GH NDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGN+NQ+ TQA P+S++QG+NLED++KALATNT SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSSPDL-LIDESKKKEKNKENNASSPSSKDEVS
        T AISK++GKGKLPAQPDHANVSAISLRSGKIL TP ++EK  +S  L L  +++ KE+  E N S  +SK++ S
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSSPDL-LIDESKKKEKNKENNASSPSSKDEVS

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-5759.8Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGN+NQ+ TQA P+S++QG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPS-EEKVPSSPDLLIDESKKKEKNKENNASSPSSKDE----------------VSRGALAVKDL
        T  ISK++GKGKL AQPDHANVS ISLRS KIL TP + E+KV S P  L  +++ KE+  E N S  +SK++                 SR AL  K+ 
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPS-EEKVPSSPDLLIDESKKKEKNKENNASSPSSKDE----------------VSRGALAVKDL

Query:  PREE
        P EE
Subjt:  PREE

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]9.8e-5865.71Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGN+NQ+ TQA P+S++QG+NLED++KALATNT+SFQ +MKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSSPDL-LIDESKKKEKNKENNASSPSSKDEVS
        T  ISK++GKGKLPAQPDH NVSAISLRSGKIL TP ++EK  +S  L L  +++ KE+  E N+SS +SK++ S
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSSPDL-LIDESKKKEKNKENNASSPSSKDEVS

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]1.7e-5759.8Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGN+NQ+ TQA P+S++QG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPS-EEKVPSSPDLLIDESKKKEKNKENNASSPSSKDE----------------VSRGALAVKDL
        T  ISK++GKGKL AQPDHANVS ISLRS KIL TP + E+KV S P  L  +++ KE+  E N S  +SK++                 SR AL  K+ 
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPS-EEKVPSSPDLLIDESKKKEKNKENNASSPSSKDE----------------VSRGALAVKDL

Query:  PREE
        P EE
Subjt:  PREE

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032914.8e-5865.71Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGN+NQ+ TQA P+S++QG+NLED++KALATNT+SFQ +MKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSSPDL-LIDESKKKEKNKENNASSPSSKDEVS
        T  ISK++GKGKLPAQPDH NVSAISLRSGKIL TP ++EK  +S  L L  +++ KE+  E N+SS +SK++ S
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSSPDL-LIDESKKKEKNKENNASSPSSKDEVS

A0A1S4E3R2 uncharacterized protein LOC1079919108.1e-5859.8Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGN+NQ+ TQA P+S++QG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPS-EEKVPSSPDLLIDESKKKEKNKENNASSPSSKDE----------------VSRGALAVKDL
        T  ISK++GKGKL AQPDHANVS ISLRS KIL TP + E+KV S P  L  +++ KE+  E N S  +SK++                 SR AL  K+ 
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPS-EEKVPSSPDLLIDESKKKEKNKENNASSPSSKDE----------------VSRGALAVKDL

Query:  PREE
        P EE
Subjt:  PREE

A0A5A7T4R3 Retrotransposon gag protein4.0e-5766.29Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GH NDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGN+NQ+ TQA P+S++QG+NLED++KALATNT SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSSPDL-LIDESKKKEKNKENNASSPSSKDEVS
        T AISK++GKGKLPAQPDHANVSAISLRSGKIL TP ++EK  +S  L L  +++ KE+  E N S  +SK++ S
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSSPDL-LIDESKKKEKNKENNASSPSSKDEVS

A0A5D3DCG3 Retrotransposon gag protein8.1e-5859.8Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGN+NQ+ TQA P+S++QG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPS-EEKVPSSPDLLIDESKKKEKNKENNASSPSSKDE----------------VSRGALAVKDL
        T  ISK++GKGKL AQPDHANVS ISLRS KIL TP + E+KV S P  L  +++ KE+  E N S  +SK++                 SR AL  K+ 
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPS-EEKVPSSPDLLIDESKKKEKNKENNASSPSSKDE----------------VSRGALAVKDL

Query:  PREE
        P EE
Subjt:  PREE

E5GBZ4 Retrotransposon gag protein6.2e-5866.29Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGN+NQ+ TQA P+S++QG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSSPDL-LIDESKKKEKNKENNASSPSSKDEVS
        T AISK++GKGKLPAQPD+ANVSAISLRSGKIL TP ++EK  +S  L L  +++ KE+  E N S  +SK++ S
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSSPDL-LIDESKKKEKNKENNASSPSSKDEVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAACGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAACCCACGCAAGCAACTC
CTTCTTCAAACAGTCAAGGTAGTAATTTGGAGGATCTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAAT
GCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATCCTGCAAACCCCTCCAAGTGA
AGAAAAGGTACCTTCTAGCCCTGACCTTCTAATTGATGAAAGCAAGAAAAAGGAAAAAAATAAAGAAAACAATGCCTCTTCTCCTTCTTCAAAAGATGAAGTATCTCGCG
GAGCTCTGGCTGTGAAGGACTTGCCTCGCGAAGAAGGCAGTCTGCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAACGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAACCCACGCAAGCAACTC
CTTCTTCAAACAGTCAAGGTAGTAATTTGGAGGATCTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAAT
GCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATCCTGCAAACCCCTCCAAGTGA
AGAAAAGGTACCTTCTAGCCCTGACCTTCTAATTGATGAAAGCAAGAAAAAGGAAAAAAATAAAGAAAACAATGCCTCTTCTCCTTCTTCAAAAGATGAAGTATCTCGCG
GAGCTCTGGCTGTGAAGGACTTGCCTCGCGAAGAAGGCAGTCTGCGATGA
Protein sequenceShow/hide protein sequence
MAPLPGSDGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNSQGSNLEDLVKALATNTISFQNEMKQQMSQLTN
AISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSSPDLLIDESKKKEKNKENNASSPSSKDEVSRGALAVKDLPREEGSLR