; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0013896 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013896
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr04:27621555..27621845
RNA-Seq ExpressionPI0013896
SyntenyPI0013896
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038999.1 envelope-like protein [Cucumis melo var. makuwa]3.0e-1248.35Show/hide
Query:  PVDAPVTESPSLETCSSQT---SLFRSTVPLVLPSAAPSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL
        PVD   TE+ + + CS  T   ++   T+ +      PS+HV+KNHPSS II +  +GITTRKK ++DY+KMIA++CYTS++EP +VE AL
Subjt:  PVDAPVTESPSLETCSSQT---SLFRSTVPLVLPSAAPSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL

KAA0041516.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.2e-1370.37Show/hide
Query:  PSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL
        PSTH+ KNHPSS IIG++HSGI TRKK+R DY KM+ANVCYTSS+EP  +  AL
Subjt:  PSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL

KAA0043140.1 F5J5.1 [Cucumis melo var. makuwa]2.7e-1370.37Show/hide
Query:  PSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL
        P  H+ KNHPSS IIG++HSGITTRKK+R+DY KM+ANVCYTS++EP NV  AL
Subjt:  PSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL

KAA0047401.1 Receptor-like protein 12 [Cucumis melo var. makuwa]2.3e-1268.52Show/hide
Query:  PSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL
        P TH+ KNHPSS IIG++HSGI T+KK+R DY KM+ANVCYTSS+EP  V  AL
Subjt:  PSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL

KAA0067010.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.6e-1369.09Show/hide
Query:  APSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL
        APS HV+KNHPSSCII E+ +GITTRK++R DY KM+ANVC+TS+ EP N+ EAL
Subjt:  APSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL

TrEMBL top hitse value%identityAlignment
A0A5A7TII3 F5J5.11.3e-1370.37Show/hide
Query:  PSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL
        P  H+ KNHPSS IIG++HSGITTRKK+R+DY KM+ANVCYTS++EP NV  AL
Subjt:  PSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL

A0A5A7VIH3 Putative mitochondrial protein7.7e-1469.09Show/hide
Query:  APSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL
        APS HV+KNHPSSCII E+ +GITTRK++R DY KM+ANVC+TS+ EP N+ EAL
Subjt:  APSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL

A0A5D3CQ77 Receptor-like protein 121.1e-1268.52Show/hide
Query:  PSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL
        P TH+ KNHPSS IIG++HSGI T+KK+R DY KM+ANVCYTSS+EP  V  AL
Subjt:  PSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL

A0A5D3DM65 Gag-pol polyprotein5.9e-1470.37Show/hide
Query:  PSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL
        PSTH+ KNHPSS IIG++HSGI TRKK+R DY KM+ANVCYTSS+EP  +  AL
Subjt:  PSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL

A0A5D3DZQ7 Gag-pol polyprotein1.5e-1264.81Show/hide
Query:  PSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL
        PSTHV+KNHPSS IIG+  +GITTR+K+++DYTKMIA++CY S+M+P ++E AL
Subjt:  PSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGAGGACAGTTCAGTAATACCTGTTGATGCTCCTGTTACGGAGTCTCCAAGCCTGGAGACCTGCTCCAGTCAGACTAGTCTTTTCCGTTCTACGGTACCCCTGGT
GTTACCCAGTGCTGCTCCCTCAACTCATGTTCAGAAAAATCATCCCTCAAGTTGTATCATTGGGGAGATGCATAGTGGTATTACCACTCGTAAGAAGAAACGAATGGACT
ATACTAAAATGATTGCCAATGTTTGTTACACTTCATCCATGGAACCTGTCAATGTTGAAGAAGCTTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGAGGACAGTTCAGTAATACCTGTTGATGCTCCTGTTACGGAGTCTCCAAGCCTGGAGACCTGCTCCAGTCAGACTAGTCTTTTCCGTTCTACGGTACCCCTGGT
GTTACCCAGTGCTGCTCCCTCAACTCATGTTCAGAAAAATCATCCCTCAAGTTGTATCATTGGGGAGATGCATAGTGGTATTACCACTCGTAAGAAGAAACGAATGGACT
ATACTAAAATGATTGCCAATGTTTGTTACACTTCATCCATGGAACCTGTCAATGTTGAAGAAGCTTTATAG
Protein sequenceShow/hide protein sequence
MSEDSSVIPVDAPVTESPSLETCSSQTSLFRSTVPLVLPSAAPSTHVQKNHPSSCIIGEMHSGITTRKKKRMDYTKMIANVCYTSSMEPVNVEEAL