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PI0013922 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013922
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPol protein
Genome locationchr04:17982720..17982959
RNA-Seq ExpressionPI0013922
SyntenyPI0013922
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037901.1 pol protein [Cucumis melo var. makuwa]3.1e-3184.81Show/hide
Query:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
        MLRKYV DPSHV+DY+PL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNH+VEEATWEREDDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
KAA0043066.1 pol protein [Cucumis melo var. makuwa]2.4e-3186.08Show/hide
Query:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
        MLRKYV DPSHV+DY+PL IDENLSYVE PVE+LA+EVKTLRN+EI LVKVLWRNH+VEEATWEREDDMR RYPELFEG
Subjt:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
KAA0053631.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-3187.18Show/hide
Query:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFE
        MLRKYV DPSHV+DY+PL IDENLSYVE PVE+LA+EVKTLRN+EI LVKVLWRNHQVEEATWEREDDMR+RYPELFE
Subjt:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFE
KAA0059750.1 pol protein [Cucumis melo var. makuwa]3.1e-3183.54Show/hide
Query:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
        MLRKYV DPSHV+DY+PL IDENLSYVE P+E+LA+EVKTLRN+EI LVKVLWRNH+VEEATWEREDDMR+RYP+LFEG
Subjt:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
KAA0068212.1 pol protein [Cucumis melo var. makuwa]6.3e-3286.08Show/hide
Query:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
        MLRKYV DPSHV+DY+PL IDENLSYVE PVE+LA+EVKTLRN+EI+LVKVLWRNH+VEEATWEREDDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
TrEMBL top hitse value%identityAlignment
A0A5A7T8G8 Reverse transcriptase1.5e-3184.81Show/hide
Query:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
        MLRKYV DPSHV+DY+PL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNH+VEEATWEREDDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
A0A5A7TGS7 Reverse transcriptase1.5e-3184.81Show/hide
Query:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
        MLRKYV DPSHV+DY+PL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNH+VEEATWEREDDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
A0A5A7TM23 Pol protein1.2e-3186.08Show/hide
Query:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
        MLRKYV DPSHV+DY+PL IDENLSYVE PVE+LA+EVKTLRN+EI LVKVLWRNH+VEEATWEREDDMR RYPELFEG
Subjt:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
A0A5A7UJG5 Ty3-gypsy retrotransposon protein8.8e-3287.18Show/hide
Query:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFE
        MLRKYV DPSHV+DY+PL IDENLSYVE PVE+LA+EVKTLRN+EI LVKVLWRNHQVEEATWEREDDMR+RYPELFE
Subjt:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFE
A0A5A7VIQ0 Pol protein3.0e-3286.08Show/hide
Query:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
        MLRKYV DPSHV+DY+PL IDENLSYVE PVE+LA+EVKTLRN+EI+LVKVLWRNH+VEEATWEREDDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGGAAATACGTGGCTGATCCATCGCATGTTTTGGACTATAAGCCTTTAGCTATTGATGAGAATTTGAGCTACGTTGAGCATCCAGTTGAGATTTTGGCCAAGGA
AGTAAAGACGCTTCGTAACCGGGAGATTGCCCTAGTGAAGGTCCTTTGGCGCAACCACCAGGTGGAAGAGGCCACTTGGGAGCGGGAGGATGACATGAGAGCTCGTTACC
CAGAGTTGTTCGAGGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGGAAATACGTGGCTGATCCATCGCATGTTTTGGACTATAAGCCTTTAGCTATTGATGAGAATTTGAGCTACGTTGAGCATCCAGTTGAGATTTTGGCCAAGGA
AGTAAAGACGCTTCGTAACCGGGAGATTGCCCTAGTGAAGGTCCTTTGGCGCAACCACCAGGTGGAAGAGGCCACTTGGGAGCGGGAGGATGACATGAGAGCTCGTTACC
CAGAGTTGTTCGAGGGTTAG
Protein sequenceShow/hide protein sequence
MLRKYVADPSHVLDYKPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQVEEATWEREDDMRARYPELFEG