CuGenDBv2

Gene ID	PI0013972
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr11:17931293..17932726
RNA-Seq Expression	PI0013972
Synteny	PI0013972
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]

3.3e-33

71.88

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Query:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE
        MDRRCF ILCHLLRTT+RL  T+++DVEEMV MF H+LAH++KNR+IQ+EFVRSGET+S+HFN+VLL++L LH+ELLKK Q VTN+C +PRWK+FE
Subjt:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]

3.9e-34

76.04

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Query:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE
        MDRRCF ILCHLLRTT+ L  T+++DVEEMV MF H+LAH VKNR+IQ+EFVRSGET+S+HFNIVLLA   LHDELLKK QPVTN+CT+PRWK+FE
Subjt:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE

TYK08389.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]

5.9e-35

76.04

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Query:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE
        MDRRCF ILCHLLRT++ L  T+++DVEEMV MF H+LAH+VKNR+IQKEF RSGET+S+HFNIVLLA+L LHDELLKK QPVTN+CT+PRWK+FE
Subjt:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE

XP_008441953.1 PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo]

5.9e-35

76.04

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Query:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE
        MDRRCF ILCHLLRT++ L  T+++DVEEMV MF H+LAH+VKNR+IQKEF RSGET+S+HFNIVLLA+L LHDELLKK QPVTN+CT+PRWK+FE
Subjt:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE

XP_008455792.1 PREDICTED: putative nuclease HARBI1 [Cucumis melo]

1.3e-34

76.04

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Query:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE
        MDRRCF ILCHLLRTT+ L  T+++DVEEMV MF H+LAH+VKNR+IQ+EFVRSGET+S+HFNIVLLA   LHDELLKK QPVTN+CT+PRWK+FE
Subjt:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B4J8 uncharacterized protein LOC103485952

2.9e-35

76.04

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Query:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE
        MDRRCF ILCHLLRT++ L  T+++DVEEMV MF H+LAH+VKNR+IQKEF RSGET+S+HFNIVLLA+L LHDELLKK QPVTN+CT+PRWK+FE
Subjt:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE

A0A1S3C1U8 putative nuclease HARBI1

6.4e-35

76.04

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Query:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE
        MDRRCF ILCHLLRTT+ L  T+++DVEEMV MF H+LAH+VKNR+IQ+EFVRSGET+S+HFNIVLLA   LHDELLKK QPVTN+CT+PRWK+FE
Subjt:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE

A0A5A7U0J9 Putative nuclease HARBI1

2.9e-35

76.04

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Query:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE
        MDRRCF ILCHLLRT++ L  T+++DVEEMV MF H+LAH+VKNR+IQKEF RSGET+S+HFNIVLLA+L LHDELLKK QPVTN+CT+PRWK+FE
Subjt:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE

A0A5D3CDG6 Putative nuclease HARBI1

2.9e-35

76.04

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Query:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE
        MDRRCF ILCHLLRT++ L  T+++DVEEMV MF H+LAH+VKNR+IQKEF RSGET+S+HFNIVLLA+L LHDELLKK QPVTN+CT+PRWK+FE
Subjt:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE

A0A5D3DG22 Retrotransposon protein

1.9e-34

76.04

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Query:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE
        MDRRCF ILCHLLRTT+ L  T+++DVEEMV MF H+LAH VKNR+IQ+EFVRSGET+S+HFNIVLLA   LHDELLKK QPVTN+CT+PRWK+FE
Subjt:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

5.4e-10

37.5

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Query:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACT
        MD+  F  LC LL+T   L  T  + +E  + +F  ++ HN++ R +Q+ F  SGETIS+HFN VL A++ +  +     QP +N+ T
Subjt:  MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACT

Sequences

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CDS sequence

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ATGGATAGAAGATGTTTTGTCATTCTATGCCACCTACTTAGGACCACTTCTAGATTAGCGTCGACGAAAATCGTCGATGTCGAGGAGATGGTCATCATGTTCCACCACGT
ACTGGCGCACAACGTGAAGAATCGAGTGATCCAAAAGGAGTTTGTGCGGTCTGGTGAGACAATTTCGCAACATTTCAACATAGTCTTGTTGGCAATGTTATGCCTACATG
ACGAGTTGTTGAAAAAACTGCAACCAGTAACGAACGCATGCACAAATCCTCGATGGAAGTATTTTGAGTATGACAAGCTCTTCCCGAGCCTCAAAACACATTTGGACGAA
AGAGGAAGAATCCAACCTGGTCGAGTGCTTGGTGGAGTTGGTCTACGCCAGTGGCTAAAAGTCGGATAA

mRNA sequence

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Protein sequence

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MDRRCFVILCHLLRTTSRLASTKIVDVEEMVIMFHHVLAHNVKNRVIQKEFVRSGETISQHFNIVLLAMLCLHDELLKKLQPVTNACTNPRWKYFEYDKLFPSLKTHLDE
RGRIQPGRVLGGVGLRQWLKVG

PI0013972 (gene) of Melon (PI 482460) v1 genome