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PI0013990 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013990
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr08:1041128..1041735
RNA-Seq ExpressionPI0013990
SyntenyPI0013990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]6.7e-2956.59Show/hide
Query:  MWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRGGQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRII
        M+  GL+MSPDD+M  R +R SE RN SSGSKRKR G A +  DI+R AME+ N+QL  I E   LQRQ    +  E+V++L+ IPELT  DR RLMRII
Subjt:  MWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRGGQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRII

Query:  MRNVQDMKAFLEIPDEQKLDYYTVIMEDN
        MRNV DMKAFLE+PD  K  Y ++I+++N
Subjt:  MRNVQDMKAFLEIPDEQKLDYYTVIMEDN

KAA0050216.1 retrotransposon protein [Cucumis melo var. makuwa]7.9e-3044.04Show/hide
Query:  HHAAKGLLNKSFTI----------------MTTC--------PTYLEKIVIQEHAQRHSPMWGRMWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRG
        H AAKGLLNKSF                   T C        P   +            P    M+ +GL+MSPDD+MG R +R SE RN  SGSKRKR 
Subjt:  HHAAKGLLNKSFTI----------------MTTC--------PTYLEKIVIQEHAQRHSPMWGRMWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRG

Query:  GQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRIIMRNVQDMKAFLEIPDEQKLDYYTVIMEDN
        G A +  DI+R A+E+ N+Q+  I E   LQRQ    +  E+V++L+ IPELT  DR RLM I+MRNV DMKAFLE+PD  K  YY +I+++N
Subjt:  GQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRIIMRNVQDMKAFLEIPDEQKLDYYTVIMEDN

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-3563.85Show/hide
Query:  MWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRGGQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRII
        M+ +G+DM  DDIMG RP RS+EGR  SSGSKRK+GGQA+E ++IIR+ ME +ND+LKAIVE LN+QRQ   A   EVV++LQ IPEL+  DRVR M+I+
Subjt:  MWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRGGQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRII

Query:  MRNVQDMKAFLEIPDEQKLDYYTVIMEDNA
        M NV DMKAFL+I DE KLDY T+I +DNA
Subjt:  MRNVQDMKAFLEIPDEQKLDYYTVIMEDNA

KAA0063726.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-2943.01Show/hide
Query:  HHAAKGLLNKSF------------------------TIMTTCPTYLEKIVIQEHAQRHSPMWGRMWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRG
        H AAKGLLNKSF                         + +  P   +            P    M+ +GL+MSPDD+MG R +R SE RN SSGSKRKR 
Subjt:  HHAAKGLLNKSF------------------------TIMTTCPTYLEKIVIQEHAQRHSPMWGRMWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRG

Query:  GQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRIIMRNVQDMKAFLEIPDEQKLDYYTVIMEDN
        G A +  DI+R A+E+ N+QL  I E   LQRQ    +  EVV++L+ IPEL   DR RLM I+M NV DMKAFL++PD  K  YY +I+++N
Subjt:  GQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRIIMRNVQDMKAFLEIPDEQKLDYYTVIMEDN

TYK10954.1 retrotransposon protein [Cucumis melo var. makuwa]7.9e-3043.52Show/hide
Query:  HHAAKGLLNKSF------------------------TIMTTCPTYLEKIVIQEHAQRHSPMWGRMWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRG
        H AAKGLLNKSF                         + +  P   +            P    M+ +GL+MSPDD+MG R +R SE RN SSGSKRKR 
Subjt:  HHAAKGLLNKSF------------------------TIMTTCPTYLEKIVIQEHAQRHSPMWGRMWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRG

Query:  GQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRIIMRNVQDMKAFLEIPDEQKLDYYTVIMEDN
        G A +  DI+R A+E+ N+QL  I E   LQRQ    +  EVV+KL+ IPEL   DR RLM I+M NV DMKAFL++PD  K  YY +I+++N
Subjt:  GQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRIIMRNVQDMKAFLEIPDEQKLDYYTVIMEDN

TrEMBL top hitse value%identityAlignment
A0A5A7TZA5 Retrotransposon protein3.2e-2944.9Show/hide
Query:  HHAAKGLLNKSFTIMTTCPTY--LEKIVIQEHAQ-----------RHSPM--------------WGRMWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKR
        H AAKGLLNKSF      P Y  L  +  ++HA             + P               +  M+  GL+MSPD++MG R +R SEGR  SSGSK+
Subjt:  HHAAKGLLNKSFTIMTTCPTY--LEKIVIQEHAQ-----------RHSPM--------------WGRMWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKR

Query:  KRGGQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRIIMRNVQDMKAFLEIPDEQKLDYYTVIMEDN
        KRGG  I+  DI+R A+E+ N+QL  I E   LQRQ    +  EVV++L+ IPELT  DR RLMRI++ NV DMKAFLE+PD  K  Y ++I+E+N
Subjt:  KRGGQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRIIMRNVQDMKAFLEIPDEQKLDYYTVIMEDN

A0A5A7U7R0 Retrotransposon protein3.8e-3044.04Show/hide
Query:  HHAAKGLLNKSFTI----------------MTTC--------PTYLEKIVIQEHAQRHSPMWGRMWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRG
        H AAKGLLNKSF                   T C        P   +            P    M+ +GL+MSPDD+MG R +R SE RN  SGSKRKR 
Subjt:  HHAAKGLLNKSFTI----------------MTTC--------PTYLEKIVIQEHAQRHSPMWGRMWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRG

Query:  GQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRIIMRNVQDMKAFLEIPDEQKLDYYTVIMEDN
        G A +  DI+R A+E+ N+Q+  I E   LQRQ    +  E+V++L+ IPELT  DR RLM I+MRNV DMKAFLE+PD  K  YY +I+++N
Subjt:  GQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRIIMRNVQDMKAFLEIPDEQKLDYYTVIMEDN

A0A5A7V469 Retrotransposon protein8.0e-3663.85Show/hide
Query:  MWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRGGQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRII
        M+ +G+DM  DDIMG RP RS+EGR  SSGSKRK+GGQA+E ++IIR+ ME +ND+LKAIVE LN+QRQ   A   EVV++LQ IPEL+  DRVR M+I+
Subjt:  MWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRGGQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRII

Query:  MRNVQDMKAFLEIPDEQKLDYYTVIMEDNA
        M NV DMKAFL+I DE KLDY T+I +DNA
Subjt:  MRNVQDMKAFLEIPDEQKLDYYTVIMEDNA

A0A5A7VBC5 Retrotransposon protein1.1e-2943.01Show/hide
Query:  HHAAKGLLNKSF------------------------TIMTTCPTYLEKIVIQEHAQRHSPMWGRMWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRG
        H AAKGLLNKSF                         + +  P   +            P    M+ +GL+MSPDD+MG R +R SE RN SSGSKRKR 
Subjt:  HHAAKGLLNKSF------------------------TIMTTCPTYLEKIVIQEHAQRHSPMWGRMWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRG

Query:  GQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRIIMRNVQDMKAFLEIPDEQKLDYYTVIMEDN
        G A +  DI+R A+E+ N+QL  I E   LQRQ    +  EVV++L+ IPEL   DR RLM I+M NV DMKAFL++PD  K  YY +I+++N
Subjt:  GQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRIIMRNVQDMKAFLEIPDEQKLDYYTVIMEDN

A0A5D3CIF5 Retrotransposon protein3.8e-3043.52Show/hide
Query:  HHAAKGLLNKSF------------------------TIMTTCPTYLEKIVIQEHAQRHSPMWGRMWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRG
        H AAKGLLNKSF                         + +  P   +            P    M+ +GL+MSPDD+MG R +R SE RN SSGSKRKR 
Subjt:  HHAAKGLLNKSF------------------------TIMTTCPTYLEKIVIQEHAQRHSPMWGRMWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRG

Query:  GQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRIIMRNVQDMKAFLEIPDEQKLDYYTVIMEDN
        G A +  DI+R A+E+ N+QL  I E   LQRQ    +  EVV+KL+ IPEL   DR RLM I+M NV DMKAFL++PD  K  YY +I+++N
Subjt:  GQAIEIVDIIRHAMEFANDQLKAIVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRIIMRNVQDMKAFLEIPDEQKLDYYTVIMEDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCACATAAAAGAGTTGCATAACCTAATACATCATGCGGCGAAGGGCCTCCTCAACAAATCATTTACCATTATGACAACCTGTCCTACGTATTTGGAAAAGATCGT
GATACAAGAGCACGCGCAGAGACATTCGCCGATGTGGGGTCGAATGTGGCAGGAGGGACTAGACATGTCGCCTGATGACATCATGGGCATACGACCTAGTCGATCAAGTG
AGGGTAGGAATGCTTCGAGTGGAAGCAAGAGGAAGCGGGGAGGACAAGCAATTGAAATTGTTGACATCATTCGCCATGCAATGGAATTTGCGAATGATCAGTTAAAGGCC
ATTGTAGAATGCCTGAATTTACAACGTCAAGCGGAGGATGCCTCGCATGCAGAAGTTGTGAAAAAGTTGCAAGGAATCCCTGAACTGACTAACCGTGATAGGGTGCGCCT
TATGCGAATAATAATGCGCAATGTCCAAGACATGAAAGCATTCTTGGAGATACCCGACGAACAAAAATTGGACTACTATACCGTGATAATGGAAGATAACGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCCACATAAAAGAGTTGCATAACCTAATACATCATGCGGCGAAGGGCCTCCTCAACAAATCATTTACCATTATGACAACCTGTCCTACGTATTTGGAAAAGATCGT
GATACAAGAGCACGCGCAGAGACATTCGCCGATGTGGGGTCGAATGTGGCAGGAGGGACTAGACATGTCGCCTGATGACATCATGGGCATACGACCTAGTCGATCAAGTG
AGGGTAGGAATGCTTCGAGTGGAAGCAAGAGGAAGCGGGGAGGACAAGCAATTGAAATTGTTGACATCATTCGCCATGCAATGGAATTTGCGAATGATCAGTTAAAGGCC
ATTGTAGAATGCCTGAATTTACAACGTCAAGCGGAGGATGCCTCGCATGCAGAAGTTGTGAAAAAGTTGCAAGGAATCCCTGAACTGACTAACCGTGATAGGGTGCGCCT
TATGCGAATAATAATGCGCAATGTCCAAGACATGAAAGCATTCTTGGAGATACCCGACGAACAAAAATTGGACTACTATACCGTGATAATGGAAGATAACGCTTGA
Protein sequenceShow/hide protein sequence
MIHIKELHNLIHHAAKGLLNKSFTIMTTCPTYLEKIVIQEHAQRHSPMWGRMWQEGLDMSPDDIMGIRPSRSSEGRNASSGSKRKRGGQAIEIVDIIRHAMEFANDQLKA
IVECLNLQRQAEDASHAEVVKKLQGIPELTNRDRVRLMRIIMRNVQDMKAFLEIPDEQKLDYYTVIMEDNA