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PI0014013 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0014013
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr11:15177144..15177875
RNA-Seq ExpressionPI0014013
SyntenyPI0014013
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060538.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-2061.36Show/hide
Query:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQV------LLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY
        L +L R +AGL+ST++VDVEEMV MFLHVL HDVKN+V      L+K+P  VT+ C +  W+ FENCLGALD TYIKVNV A D+PT+
Subjt:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQV------LLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY

KAA0063060.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-2163.41Show/hide
Query:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQVLLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY
        L +L R +AGL+ST++VDVEEM+ MFLHVL HDVKN+ L+K+P  VT+ C +  W+ FENCLGALD TYIKVNV A D+PT+
Subjt:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQVLLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY

KAA0063753.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]6.4e-2167.07Show/hide
Query:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQVLLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY
        L +L RT A L  T+V+DVEEMV MFLH+L HD+ N+ LLKKPQ VTN CT+L W+ FENCLGALD TYIKVNV A D+P Y
Subjt:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQVLLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-1954.95Show/hide
Query:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQV-----------------------------LLKKPQLVTNTCTNLLWRRFENCLGALDDTYIK
        L +L RTIAGL ST+VVDVEEMV MFLH+L HDVKN+V                             LLKKPQ V N CT+  WR FENCLGALD TYIK
Subjt:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQV-----------------------------LLKKPQLVTNTCTNLLWRRFENCLGALDDTYIK

Query:  VNVIANDQPTY
        VNV A+DQ  Y
Subjt:  VNVIANDQPTY

KAA0067988.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-2061.36Show/hide
Query:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQV------LLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY
        L +L R +AGL+ST++VDVEEMV MFLHVL HDVKN+V      L+K+P  VT+ C +  W+ FENCLGALD TYIKVNV A D+PT+
Subjt:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQV------LLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY

TrEMBL top hitse value%identityAlignment
A0A5A7UZ70 Retrotransposon protein1.5e-2061.36Show/hide
Query:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQV------LLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY
        L +L R +AGL+ST++VDVEEMV MFLHVL HDVKN+V      L+K+P  VT+ C +  W+ FENCLGALD TYIKVNV A D+PT+
Subjt:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQV------LLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY

A0A5A7V0W7 Retrotransposon protein5.8e-2054.95Show/hide
Query:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQV-----------------------------LLKKPQLVTNTCTNLLWRRFENCLGALDDTYIK
        L +L RTIAGL STKVVDVEEMV MFLH+L HDVKN+V                             LLKKPQ V N CT+  WR FENCLGALD TYIK
Subjt:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQV-----------------------------LLKKPQLVTNTCTNLLWRRFENCLGALDDTYIK

Query:  VNVIANDQPTY
        VNV A+D+  Y
Subjt:  VNVIANDQPTY

A0A5A7V6M3 Putative nuclease HARBI13.1e-2167.07Show/hide
Query:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQVLLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY
        L +L RT A L  T+V+DVEEMV MFLH+L HD+ N+ LLKKPQ VTN CT+L W+ FENCLGALD TYIKVNV A D+P Y
Subjt:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQVLLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY

A0A5A7V738 Retrotransposon protein1.1e-2163.41Show/hide
Query:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQVLLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY
        L +L R +AGL+ST++VDVEEM+ MFLHVL HDVKN+ L+K+P  VT+ C +  W+ FENCLGALD TYIKVNV A D+PT+
Subjt:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQVLLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY

A0A5A7VJJ7 Retrotransposon protein2.0e-2061.36Show/hide
Query:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQV------LLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY
        L +L R +AGL+ST++VDVEEMV MFLHVL HDVKN+V      L+K+P  VT+ C +  W+ FENCLGALD TYIKVNV A D+PT+
Subjt:  LTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQV------LLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGTTTGTTTTGTGGGTTCCGTCTAAGTGTCACAATACCTGGATTAAGCCCCTTGACATACTTGTGCAGGACAATCGCTGGATTAGCATCGACTAAAGTGGTCGA
TGTCGAGGAGATGGTGGTCATGTTCCTACACGTCCTGGTGCACGATGTGAAGAACCAAGTGCTGCTAAAAAAACCACAACTAGTAACAAATACGTGCACAAATCTCCTCT
GGCGACGTTTTGAGAATTGCCTTGGCGCATTAGATGACACGTACATCAAAGTGAACGTAATAGCAAATGATCAGCCAACATATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGTTTGTTTTGTGGGTTCCGTCTAAGTGTCACAATACCTGGATTAAGCCCCTTGACATACTTGTGCAGGACAATCGCTGGATTAGCATCGACTAAAGTGGTCGA
TGTCGAGGAGATGGTGGTCATGTTCCTACACGTCCTGGTGCACGATGTGAAGAACCAAGTGCTGCTAAAAAAACCACAACTAGTAACAAATACGTGCACAAATCTCCTCT
GGCGACGTTTTGAGAATTGCCTTGGCGCATTAGATGACACGTACATCAAAGTGAACGTAATAGCAAATGATCAGCCAACATATTAA
Protein sequenceShow/hide protein sequence
MESLFCGFRLSVTIPGLSPLTYLCRTIAGLASTKVVDVEEMVVMFLHVLVHDVKNQVLLKKPQLVTNTCTNLLWRRFENCLGALDDTYIKVNVIANDQPTY