CuGenDBv2

Gene ID	PI0014091
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Pol protein
Genome location	chr06:16253699..16253938
RNA-Seq Expression	PI0014091
Synteny	PI0014091
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR016197 - Chromo-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037901.1 pol protein [Cucumis melo var. makuwa]

4.1e-31

84.81

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Query:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNHRVEE TWE+EDDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG

KAA0040695.1 pol protein [Cucumis melo var. makuwa]

4.1e-31

84.81

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Query:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNHRVEE TWE+EDDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG

KAA0043066.1 pol protein [Cucumis melo var. makuwa]

3.1e-31

86.08

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Query:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI LVKVLWRNHRVEE TWE+EDDMR RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG

KAA0059750.1 pol protein [Cucumis melo var. makuwa]

4.1e-31

83.54

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Query:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSYVE P+E+LA+EVKTLRN+EI LVKVLWRNHRVEE TWE+EDDMR+RYP+LFEG
Subjt:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG

KAA0068212.1 pol protein [Cucumis melo var. makuwa]

8.2e-32

86.08

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Query:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI+LVKVLWRNHRVEE TWE+EDDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T8G8 Reverse transcriptase

2.0e-31

84.81

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Query:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNHRVEE TWE+EDDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG

A0A5A7TGS7 Reverse transcriptase

2.0e-31

84.81

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Query:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNHRVEE TWE+EDDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG

A0A5A7TGX4 Reverse transcriptase

2.0e-31

84.81

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Query:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNHRVEE TWE+EDDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG

A0A5A7TM23 Pol protein

1.5e-31

86.08

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Query:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI LVKVLWRNHRVEE TWE+EDDMR RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG

A0A5A7VIQ0 Pol protein

4.0e-32

86.08

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Query:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI+LVKVLWRNHRVEE TWE+EDDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTGAGAAAATACGTGGCTGACCCATCACATGTTTTGGATTATGAGCCTTTGGCAATTGATGAGAATTTGAGCTACGTAGAGCACCCAGTTGAGATTTTGGCCAAGGA
AGTAAAGACGCTTCGTAACCGGGAAATTGCCTTAGTGAAGGTCCTTTGGCGCAATCACCGGGTCGAAGAGACCACATGGGAGCAGGAGGATGACATGAGAGCTCGTTACC
CGGAGTTGTTTGAGGGTTAG

mRNA sequence

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Protein sequence

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MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHRVEETTWEQEDDMRARYPELFEG

PI0014091 (gene) of Melon (PI 482460) v1 genome