CuGenDBv2

Gene ID	PI0014097
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	protein LSM12 homolog A
Genome location	chr10:18815211..18817600
RNA-Seq Expression	PI0014097
Synteny	PI0014097
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0030198 - extracellular matrix organization (biological process) GO:0030574 - collagen catabolic process (biological process) GO:0031012 - extracellular matrix (cellular component) GO:0004222 - metalloendopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR019181 - Anticodon-binding domain IPR039683 - Protein Lsm12-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0034336.1 protein LSM12-like protein A [Cucumis melo var. makuwa]

3.7e-82

79.82

Show/hide

Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                                     EGSKPGPRRNIRLLKANYIKE
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE

Query:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV
        FSFLGHGEDPLDLKN YLD   LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYLPDSVSGGTPAANERV
Subjt:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV

Query:  KKVLELERKRLQVRVGGQ
        KKVLELERKRLQVR GGQ
Subjt:  KKVLELERKRLQVRVGGQ

KGN52415.2 hypothetical protein Csa_008581 [Cucumis sativus]

2.2e-82

79.36

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Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                                     EGSKPGPRRNIRLLKANYIKE
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE

Query:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV
        FSFLGHGEDPLDLKN YLD   LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLP+SVSGGTPAANERV
Subjt:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV

Query:  KKVLELERKRLQVRVGGQ
        KKVLE ERKRLQVR GGQ
Subjt:  KKVLELERKRLQVRVGGQ

XP_004135229.1 protein LSM12 homolog A [Cucumis sativus]

3.0e-84

80.73

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Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL                                  QEGSKPGPRRNIRLLKANYIKE
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE

Query:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV
        FSFLGHGEDPLDLKN YLD   LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLP+SVSGGTPAANERV
Subjt:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV

Query:  KKVLELERKRLQVRVGGQ
        KKVLE ERKRLQVR GGQ
Subjt:  KKVLELERKRLQVRVGGQ

XP_008447009.1 PREDICTED: protein LSM12 homolog A [Cucumis melo]

1.4e-84

82.57

Show/hide

Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL     +    F   V TF           P  +  +QEGSKPGPRRNIRLLKANYIKE
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE

Query:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV
        FSFLGHGEDPLDLKN YLD   LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYLPDSVSGGTPAANERV
Subjt:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV

Query:  KKVLELERKRLQVRVGGQ
        KKVLELERKRLQVR GGQ
Subjt:  KKVLELERKRLQVRVGGQ

XP_038892233.1 protein LSM12 homolog A-like [Benincasa hispida]

3.0e-84

80.73

Show/hide

Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL                                  QEGSKPGPRRNIRLLKANYIKE
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE

Query:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV
        FSFLGHGEDPLDLKN YLD   LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLP+SVSGGTPAANERV
Subjt:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV

Query:  KKVLELERKRLQVRVGGQ
        KKVLELERKRLQVR  GQ
Subjt:  KKVLELERKRLQVRVGGQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQA9 AD domain-containing protein

1.5e-84

80.73

Show/hide

Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL                                  QEGSKPGPRRNIRLLKANYIKE
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE

Query:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV
        FSFLGHGEDPLDLKN YLD   LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLP+SVSGGTPAANERV
Subjt:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV

Query:  KKVLELERKRLQVRVGGQ
        KKVLE ERKRLQVR GGQ
Subjt:  KKVLELERKRLQVRVGGQ

A0A1S3BGE7 protein LSM12 homolog A

6.5e-85

82.57

Show/hide

Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL     +    F   V TF           P  +  +QEGSKPGPRRNIRLLKANYIKE
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE

Query:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV
        FSFLGHGEDPLDLKN YLD   LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYLPDSVSGGTPAANERV
Subjt:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV

Query:  KKVLELERKRLQVRVGGQ
        KKVLELERKRLQVR GGQ
Subjt:  KKVLELERKRLQVRVGGQ

A0A5A7SWT7 Protein LSM12-like protein A

1.8e-82

79.82

Show/hide

Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                                     EGSKPGPRRNIRLLKANYIKE
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE

Query:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV
        FSFLGHGEDPLDLKN YLD   LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYLPDSVSGGTPAANERV
Subjt:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV

Query:  KKVLELERKRLQVRVGGQ
        KKVLELERKRLQVR GGQ
Subjt:  KKVLELERKRLQVRVGGQ

A0A5D3CUL6 Protein LSM12-like protein A

8.8e-82

79.91

Show/hide

Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                                     EGSKPGPRRNIRLLKANYIKE
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE

Query:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV
        FSFLGHGEDPLDLKN YLD   LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYLPDSVSGGTPAANERV
Subjt:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV

Query:  KKVLELERKRLQVR
        KKVLELERKRLQVR
Subjt:  KKVLELERKRLQVR

A0A6J1DDK3 protein LSM12 homolog

1.5e-81

77.98

Show/hide

Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILVL                                  QEGSKPGP RNIRLLKANYIKE
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKE

Query:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV
        F+FLGHGEDPLDLK  YLD   LN+LR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYL +SV+GGTPAANERV
Subjt:  FSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERV

Query:  KKVLELERKRLQVRVGGQ
        KKVLELERKRLQVR GGQ
Subjt:  KKVLELERKRLQVRVGGQ

SwissProt top hits

e value

%identity

Alignment

Q0VCF9 Protein LSM12 homolog

1.6e-08

Show/hide

Query:  GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLG-HG
        G+ FSVGS  S +T      QG+V+ FD  S +L L   SS                                 KP    +I L+   Y+ E   +    
Subjt:  GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLG-HG

Query:  EDPLDLKNGYLDLNTL-NTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERVKKVLE
        E P  L +  L+++ L +  R  +E  + QA A    I  GV+ E Q +F  + KT+   +W +  IVVM EV ++ PY  ++  G   +A   V+K++E
Subjt:  EDPLDLKNGYLDLNTL-NTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERVKKVLE

Q3MHD2 Protein LSM12 homolog

1.6e-08

Show/hide

Query:  GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLG-HG
        G+ FSVGS  S +T      QG+V+ FD  S +L L   SS                                 KP    +I L+   Y+ E   +    
Subjt:  GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLG-HG

Query:  EDPLDLKNGYLDLNTL-NTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERVKKVLE
        E P  L +  L+++ L +  R  +E  + QA A    I  GV+ E Q +F  + KT+   +W +  IVVM EV ++ PY  ++  G   +A   V+K++E
Subjt:  EDPLDLKNGYLDLNTL-NTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERVKKVLE

Q5ZML5 Protein LSM12 homolog

8.7e-10

Show/hide

Query:  GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLG-HG
        G+ FSVGS  S +T      QG+V+ FD PS +L L   SS                                 KP    +I L+   Y+ E   +    
Subjt:  GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLG-HG

Query:  EDPLDLKNGYLDLNTL-NTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERVKKVLE
        E P  L +  L+++ L N  R+ +E  + QA A    I  GV+ E Q +F  + KT+   +W +  IVVM EV ++ PY  ++  G   +A   V+K++E
Subjt:  EDPLDLKNGYLDLNTL-NTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERVKKVLE

Q6NSN1 Protein LSM12 homolog B

4.6e-11

27.91

Show/hide

Query:  GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFL-G
        G G+ FSVGS  S  T LG   QG+V+ FD PS +L L                               C+   G KP    ++ L+   Y+ E   +  
Subjt:  GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFL-G

Query:  HGEDPLDLKNGYLDLNTL-NTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERVKKV
          E P  L +  L+ N L N  R  +E  +  A A    +  GV+ E Q +F  + KT+   +W +  I+VM++V +S PY  D+  G   +A   V+K+
Subjt:  HGEDPLDLKNGYLDLNTL-NTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERVKKV

Query:  LELERKRLQVRVGGQ
        +E   + ++ ++  Q
Subjt:  LELERKRLQVRVGGQ

Q6PBA2 Protein LSM12 homolog A

6.0e-11

28.71

Show/hide

Query:  GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLG-
        G G+ FSVGS  S  T LG   QG+V+ FD PS +L L   SS                                 KP    ++ L+   Y+ E   +  
Subjt:  GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLG-

Query:  HGEDPLDLKNGYLDLNTL-NTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERVKKV
          E P  L +  L+++ L N  R  +E  + QA A    I  GV+ E Q +F  + KT+   +W +  I+VM++V +S PY  ++  G   +A   ++K+
Subjt:  HGEDPLDLKNGYLDLNTL-NTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERVKKV

Query:  LE
        +E
Subjt:  LE

Arabidopsis top hits

e value

%identity

Alignment

AT1G24050.1 RNA-processing, Lsm domain

5.0e-45

50.24

Show/hide

Query:  GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGP--RRNIRLLKANYIKEFSFL
        G G+ F+VG+ +S+K   GDEF+G V+ +D   N                 F F                  +EG+KP P   +N R++ A++I   S+L
Subjt:  GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGP--RRNIRLLKANYIKEFSFL

Query:  GHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERVKKVL
        G  EDPLD  N  +D   LN LR +E LAIRQAEA+AER+GVGVT+EAQSIFDALSKTLPV+W+ + I+VM EVRV SPYL D V GGT AAN RVKKVL
Subjt:  GHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERVKKVL

Query:  ELERKRLQV
        ELER+RLQ+
Subjt:  ELERKRLQV

AT1G70220.1 RNA-processing, Lsm domain

2.4e-31

39.27

Show/hide

Query:  LDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHIL-----SSFLNFHHCVFTFHYLEFLDCF-VLPIFLCSIQEGSKPGP--RRNIRLLK
        +D  G  + F VG  +++K T GD+F G V+ +D   N  V  IL     S  ++ + C F F       CF V    L  +QEG+KP P   +++R++ 
Subjt:  LDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHIL-----SSFLNFHHCVFTFHYLEFLDCF-VLPIFLCSIQEGSKPGP--RRNIRLLK

Query:  ANYIKEFSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTP
         NYI E   LG  ++ L  KN  ++L+ L    + +E     A +  E+IG GVT+E Q IFDA+SKTLP+RW    ++VM +V + SPY  D V GG  
Subjt:  ANYIKEFSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTP

Query:  AANERVKKVLELERKRLQV
          NERVK VL  ERK+LQ+
Subjt:  AANERVKKVLELERKRLQV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCCTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCG
CCCCTCCAACATCCTCGTCCTTCATATCCTTTCTTCATTTCTAAATTTTCATCACTGTGTTTTCACTTTTCATTATCTTGAATTCCTTGACTGTTTTGTTCTTCCGATAT
TTTTGTGCTCGATACAGGAGGGTTCGAAGCCAGGACCTCGCAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGCGAAGATCCT
CTTGATCTAAAAAACGGTTACCTCGATCTCAATACTCTCAATACTCTCCGTGTCCGAGAGGAACTTGCCATTAGGCAAGCTGAGGCAGAGGCTGAGAGGATAGGAGTGGG
TGTCACTAGCGAGGCTCAAAGTATTTTTGATGCTCTATCTAAAACGCTTCCGGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGCGTTAGCAGTCCAT
ACCTACCCGACTCTGTTTCTGGGGGCACCCCTGCTGCCAATGAGCGCGTGAAGAAAGTGCTTGAATTGGAGAGGAAGCGATTGCAAGTTCGTGTCGGTGGTCAGTAA

mRNA sequence

Show/hide mRNA sequence

GTAAAGCCCTAATTTATATGAGGATTAGATAATTGTGTGGTTACCCAACTCCTTGAATAGGAGGAAACAAATTTTATAGCGAGGAAGGAGAAAATGGCACTGGACGGTAG
CGGCAATGGAGATGACTTCTCTGTAGGATCCTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCG
TCCTTCATATCCTTTCTTCATTTCTAAATTTTCATCACTGTGTTTTCACTTTTCATTATCTTGAATTCCTTGACTGTTTTGTTCTTCCGATATTTTTGTGCTCGATACAG
GAGGGTTCGAAGCCAGGACCTCGCAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGCGAAGATCCTCTTGATCTAAAAAACGG
TTACCTCGATCTCAATACTCTCAATACTCTCCGTGTCCGAGAGGAACTTGCCATTAGGCAAGCTGAGGCAGAGGCTGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTC
AAAGTATTTTTGATGCTCTATCTAAAACGCTTCCGGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGCGTTAGCAGTCCATACCTACCCGACTCTGTT
TCTGGGGGCACCCCTGCTGCCAATGAGCGCGTGAAGAAAGTGCTTGAATTGGAGAGGAAGCGATTGCAAGTTCGTGTCGGTGGTCAGTAATGTCATTCATCCCCATCCTT
CTTTCCTGGGTGACAAGCGATTACCTGCACTGGTGAAGGTATTATCCATTTTAGAGGCAGTGTCAGCAATCCCGGAGGAATCTAGTGTTGGGTGGTAACCTAGTCTGTTG
CCAAAGTTTTTTTTGTTTACTAGTTTATGGTTGTTGATTTTCCCCGTTTTTCCGTTTATGGACTGCACCGGACACATGGCAAAGCTTTTTGGGTCCATATTTAAAGTTTA
CTGATTGGTCATAATGTGGAAAAACTAAACCGGATGTATTTAGAAAATTACTGAGTACTAGTTTCTCTGTTTTTATTTCTTAGACCTTTTCTTCGTTAATTATTAAACAT
CGATGAACAGAAACAATTTTGATTTTGAAATAGGTGACCTGCCTGCTAATGGCCTAACATTGATATTGTTTGTGGCATAAGATTTGCCCCTATGGTTGTTATTTGCATGT
CGCCAAACTGGTTAGTTGAAGTTGAGAAAGTTTAGTGAAATCACATTTTTGTAGACGTCTTCCTCTCAAGAAAGGCCATAGGCAAATGAAAAGCTAGGTTAGTTGCCATG
GCGCCAAAAGAACGTTGATTTATTGATTGATTTATTTATTTTCTATGCTTTTTCTACTTTTCCCTCTTTGTTATGCTGACCTTTACTTTTCCTAATGGCCCCATTGTTGA
CTGTTTCTTTATTCCACTTTTGAAATTGCTAAGCTAATTCTTAAACCTTACGCTGGGACATTTGAAAGGAAAAAGTAATGTATTTGCCGTCTGGTTAGGGAATAAAATGA
TAACCTTTTATCTGCCCTTTCCCTCAAGGACAGCCAAATTTGAAGACATTCAAAGAGAACTTCTTTTTTTAAG

Protein sequence

Show/hide protein sequence

MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDP
LDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERVKKVLELERKRLQVRVGGQ

PI0014097 (gene) of Melon (PI 482460) v1 genome