CuGenDBv2

Gene ID	PI0014152
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr02:6357233..6357679
RNA-Seq Expression	PI0014152
Synteny	PI0014152
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]

1.6e-49

69.44

Show/hide

Query:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF
        MD   ++ I+  FI SQ +LL+ LE+L+ D KR    PY  RHRIR LAYF +IH SDLVCRQSTRMD+R FAILCHLL+T+AGL+STEVVDVEEMVAMF
Subjt:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF

Query:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK
        LH+L HDVKNRV+Q EF+RS +TISRHFNMVL+A++RLHDEL+K
Subjt:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

1.6e-49

69.44

Show/hide

Query:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF
        MD   ++ I+  FI SQ +LL+ LE+L+ D KR    PY  RHRIR LAYF +IH SDLVCRQSTRMD+R FAILCHLL+T+AGL+STEVVDVEEMVAMF
Subjt:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF

Query:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK
        LH+L HDVKNRV+Q EF+RS +TISRHFNMVL+A++RLHDEL+K
Subjt:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]

4.8e-49

68.75

Show/hide

Query:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF
        MD   ++ I+  FI SQ +LL+ LE+L+ D KR    PY  RHRIR LAYF +IH SDLVCRQSTRMD+R FAILCHLL+T+AGL+STEVVDVEEMVAMF
Subjt:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF

Query:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK
        LH+L HDVKNRV+Q EF+RS +TISRHFNMVL+A++RLH+EL+K
Subjt:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK

KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]

4.8e-49

68.75

Show/hide

Query:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF
        MD   ++ I+  FI SQ +LL+ LE+L+ D KR    PY  RHRIR LAYF +IH SDLVCRQSTRMD+R FAILCHLL+T+AGL+STEVVDVEEMVAMF
Subjt:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF

Query:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK
        LH+L HDVKNRV+Q EF+RS +TISRHFNMVL+A++RLH+EL+K
Subjt:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]

4.8e-49

68.06

Show/hide

Query:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF
        MD   ++ I+  FI SQ +LL+ LE+L+ D KR    PY  RHRIR LAYF +IHESDLVCRQSTRMD+R FAILCHLL+T+AGL+STEVVDVEEMVAMF
Subjt:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF

Query:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK
        LH+L HDVKNRV+Q EF+RS +TI RHFNM+ +A++RLHDEL+K
Subjt:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SWD8 Retrotransposon protein

7.9e-50

69.44

Show/hide

Query:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF
        MD   ++ I+  FI SQ +LL+ LE+L+ D KR    PY  RHRIR LAYF +IH SDLVCRQSTRMD+R FAILCHLL+T+AGL+STEVVDVEEMVAMF
Subjt:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF

Query:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK
        LH+L HDVKNRV+Q EF+RS +TISRHFNMVL+A++RLHDEL+K
Subjt:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK

A0A5A7TXW1 Retrotransposon protein

7.9e-50

69.44

Show/hide

Query:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF
        MD   ++ I+  FI SQ +LL+ LE+L+ D KR    PY  RHRIR LAYF +IH SDLVCRQSTRMD+R FAILCHLL+T+AGL+STEVVDVEEMVAMF
Subjt:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF

Query:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK
        LH+L HDVKNRV+Q EF+RS +TISRHFNMVL+A++RLHDEL+K
Subjt:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK

A0A5A7VG29 Retrotransposon protein

2.3e-49

68.75

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Query:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF
        MD   ++ I+  FI SQ +LL+ LE+L+ D KR    PY  RHRIR LAYF +IH SDLVCRQSTRMD+R FAILCHLL+T+AGL+STEVVDVEEMVAMF
Subjt:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF

Query:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK
        LH+L HDVKNRV+Q EF+RS +TISRHFNMVL+A++RLH+EL+K
Subjt:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK

A0A5A7VHB0 Retrotransposon protein

2.3e-49

68.06

Show/hide

Query:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF
        MD   ++ I+  FI SQ +LL+ LE+L+ D KR    PY  RHRIR LAYF +IHESDLVCRQSTRMD+R FAILCHLL+T+AGL+STEVVDVEEMVAMF
Subjt:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF

Query:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK
        LH+L HDVKNRV+Q EF+RS +TI RHFNM+ +A++RLHDEL+K
Subjt:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK

A0A5D3BDX0 Retrotransposon protein

2.3e-49

68.75

Show/hide

Query:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF
        MD   ++ I+  FI SQ +LL+ LE+L+ D KR    PY  RHRIR LAYF +IH SDLVCRQSTRMD+R FAILCHLL+T+AGL+STEVVDVEEMVAMF
Subjt:  MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMF

Query:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK
        LH+L HDVKNRV+Q EF+RS +TISRHFNMVL+A++RLH+EL+K
Subjt:  LHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G28730.1 unknown protein

2.4e-06

32.26

Show/hide

Query:  HLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMFLHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK
        H I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL +   +   R +   F  + +TI R F+ VL A+ RL  E I+
Subjt:  HLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMFLHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

2.7e-10

35.11

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Query:  FHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMFLHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK
        + +++  +  C ++ RMDK  F  LC LL+T   L  T  + +E  +A+FL ++ H+++ R VQ  F  S +TISRHFN VL A++ +  +  +
Subjt:  FHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMFLHVLTHDVKNRVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATCGGGAAGCAATCTCCGAGATTTTGACGATCTTCATTGTGTCCCAAAGTGAATTGCTAATGGCGTTGGAGATACTAAGGAAGGACTGCAAGCGGTTTCCACAAAC
TCCGTACAACATTAGACATAGGATTAGACATCTAGCATATTTCCATTTGATCCATGAGTCTGATCTTGTATGTCGGCAAAGTACCAGAATGGACAAGCGAACGTTTGCCA
TTCTTTGCCATTTGCTTAAGACGGTCGCTGGATTATCCTCGACCGAAGTCGTAGACGTTGAGGAAATGGTGGCGATGTTCCTTCACGTCCTAACACACGATGTGAAGAAC
CGAGTGGTCCAGTGGGAGTTTGTGCGGTCGGTTAAGACAATTTCAAGGCATTTCAACATGGTGTTGATGGCCATTGTACGTCTTCATGACGAGCTGATAAAAAACCACAA
CCAGTAA

mRNA sequence

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Protein sequence

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MDREAISEILTIFIVSQSELLMALEILRKDCKRFPQTPYNIRHRIRHLAYFHLIHESDLVCRQSTRMDKRTFAILCHLLKTVAGLSSTEVVDVEEMVAMFLHVLTHDVKN
RVVQWEFVRSVKTISRHFNMVLMAIVRLHDELIKNHNQ

PI0014152 (gene) of Melon (PI 482460) v1 genome