; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0014196 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0014196
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr04:21788614..21789072
RNA-Seq ExpressionPI0014196
SyntenyPI0014196
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.7e-5371.71Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG PLKV KCGVC LVGHPNDKCP++IEDVN++RKYDP+GNTYNSGWRDNPNLRWGNDNQK TQA  +SSN                    
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
        QEMKQQMTQLTTAISK++GKGKLP QPD+AN+S ISLRSGKIL+TP+++EK+
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.7e-5371.05Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVN++RKYDPHGNTYNSGWRDNPNLRWGNDNQK TQA S+SSN                    
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
        QEMKQQMTQLTTAISK++GKGKL  Q ++AN+S +SLRSGKIL+TP+++EK+
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.3e-5371.05Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG PLKV KCGVCGLVGHPNDK P++IEDVN++R+YDPHGNTYNSGWRDNP LRWGNDNQK  QA S+SSN                    
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
        QEMKQQMTQLTTAISK++GKGKLP QP+HAN+S ISLRSGKIL+TP+++EK+
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.3e-5369.74Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG P KV KCGVCGLVGHPNDKCP++IED+N++R+YDPHGNTYN GWRD PNLRWGND Q  TQA S+SSN                    
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
        QEMKQQMTQLTTAISK++GKGKLP QPDHAN+S ISLRSGKIL+TP+++EK+
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
TYK29265.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.3e-5371.05Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG PLKV KCGVCGLVGHPNDK P++IEDVN++R+YDPHGNTYNSGWRDNP LRWGNDNQK  QA S+SSN                    
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
        QEMKQQMTQLTTAISK++GKGKLP QP+HAN+S ISLRSGKIL+TP+++EK+
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
TrEMBL top hitse value%identityAlignment
A0A5A7VE49 Retrotransposon gag protein4.0e-5371.05Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG PLKV KCGVCGLVGHPNDK P++IEDVN++R+YDPHGNTYNSGWRDNP LRWGNDNQK  QA S+SSN                    
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
        QEMKQQMTQLTTAISK++GKGKLP QP+HAN+S ISLRSGKIL+TP+++EK+
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
A0A5D3CFE7 Retrotransposon gag protein4.0e-5369.74Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG P KV KCGVCGLVGHPNDKCP++IED+N++R+YDPHGNTYN GWRD PNLRWGND Q  TQA S+SSN                    
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
        QEMKQQMTQLTTAISK++GKGKLP QPDHAN+S ISLRSGKIL+TP+++EK+
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
A0A5D3CRR8 Retrotransposon gag protein1.8e-5371.05Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVN++RKYDPHGNTYNSGWRDNPNLRWGNDNQK TQA S+SSN                    
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
        QEMKQQMTQLTTAISK++GKGKL  Q ++AN+S +SLRSGKIL+TP+++EK+
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
A0A5D3E1D2 Retrotransposon gag protein4.0e-5371.05Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG PLKV KCGVCGLVGHPNDK P++IEDVN++R+YDPHGNTYNSGWRDNP LRWGNDNQK  QA S+SSN                    
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
        QEMKQQMTQLTTAISK++GKGKLP QP+HAN+S ISLRSGKIL+TP+++EK+
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
E5GBZ4 Retrotransposon gag protein8.1e-5471.71Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG PLKV KCGVC LVGHPNDKCP++IEDVN++RKYDP+GNTYNSGWRDNPNLRWGNDNQK TQA  +SSN                    
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
        QEMKQQMTQLTTAISK++GKGKLP QPD+AN+S ISLRSGKIL+TP+++EK+
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACTCTTCTTACTTCTTTTGTGCAAGGAGGCCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTAGTTGGACATCCCAATGATAAGTGCCCCGACTTGATTGA
GGATGTTAATGTCATTCGTAAATACGATCCCCACGGTAATACATACAATTCGGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGCCCACCCAAG
CAACATCCTCCTCTTCAAACCAAGAGATGAAACAACAAATGACTCAACTCACTACCGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCGGTCCAACCGGATCATGCA
AATATGAGTGTCATCTCACTAAGAAGTGGTAAGATTCTTGAAACCCCTTCTAGTGAAGAAAAAAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAACTCTTCTTACTTCTTTTGTGCAAGGAGGCCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTAGTTGGACATCCCAATGATAAGTGCCCCGACTTGATTGA
GGATGTTAATGTCATTCGTAAATACGATCCCCACGGTAATACATACAATTCGGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGCCCACCCAAG
CAACATCCTCCTCTTCAAACCAAGAGATGAAACAACAAATGACTCAACTCACTACCGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCGGTCCAACCGGATCATGCA
AATATGAGTGTCATCTCACTAAGAAGTGGTAAGATTCTTGAAACCCCTTCTAGTGAAGAAAAAAGGTAA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQEMKQQMTQLTTAISKLEGKGKLPVQPDHA
NMSVISLRSGKILETPSSEEKR