| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG7014568.1 DNA-directed RNA polymerases II and IV subunit 5A, partial [Cucurbita argyrosperma subsp. argyrosperma] | 4.6e-46 | 60.22 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
ML+DRGY +GDFE+ MSREQFK++Y E KV VKT++TY NRMK+ENVFRAILVVQ+ L+ F
Subjt: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
Query: ----VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
V EAE LVN+KDHVL+ EHQLLTNEEK TLLERY VK+TQVTDP+ARYYG+KRGQVVKIIRPSETAGRYVTYRYVV
Subjt: ----VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
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| XP_004145446.1 DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] | 1.2e-51 | 67.57 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
MLRDRG+++GDFELAMSREQFKNQY EPKVSVKTVRTY+NRMKS+NVFRAILVVQEKLSSF
Subjt: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
Query: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
V EAE LVNIKDHVLI EHQLLTNE+K TLLERY VKDT QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
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| XP_008459046.1 PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo] | 2.1e-51 | 67.57 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
MLRDRG+++GDFELAMSREQFKNQ+ EPKVSVKTVRTY+NRMKS+NVFRAILVVQEKLSSF
Subjt: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
Query: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
V EAE LVNIKDHVLI EHQLLTNEEK TLLERY VKDT QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
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| XP_016902349.1 PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Cucumis melo] | 2.9e-53 | 69.44 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
MLRDRG+++GDFELAMSREQFKNQ+ EPKVSVKTVRTY+NRMKS+NVFRAILVVQEKLSSF
Subjt: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
Query: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
V EAE LVNIKDHVLI EHQLLTNEEK TLLERY VKDTQVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
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| XP_022959553.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] | 1.3e-45 | 60.22 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
ML+DRGY +GDFE+ MSREQFKN+Y EPKV VKT++TY NRMKSENVFRAILVVQ+ L+ F
Subjt: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
Query: ----VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
V EAE LVNIKDHVL+ EHQLL+NEEK TLLERY VK+T QVTDP+ARYYG+KRGQVVKIIRPSETAGRYVTYRYVV
Subjt: ----VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0LYM6 Uncharacterized protein | 6.0e-52 | 67.57 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
MLRDRG+++GDFELAMSREQFKNQY EPKVSVKTVRTY+NRMKS+NVFRAILVVQEKLSSF
Subjt: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
Query: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
V EAE LVNIKDHVLI EHQLLTNE+K TLLERY VKDT QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
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| A0A1S3C8T2 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 | 1.0e-51 | 67.57 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
MLRDRG+++GDFELAMSREQFKNQ+ EPKVSVKTVRTY+NRMKS+NVFRAILVVQEKLSSF
Subjt: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
Query: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
V EAE LVNIKDHVLI EHQLLTNEEK TLLERY VKDT QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
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| A0A1S4E290 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 | 1.4e-53 | 69.44 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
MLRDRG+++GDFELAMSREQFKNQ+ EPKVSVKTVRTY+NRMKS+NVFRAILVVQEKLSSF
Subjt: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
Query: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
V EAE LVNIKDHVLI EHQLLTNEEK TLLERY VKDTQVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
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| A0A5A7TIR4 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 | 1.0e-51 | 67.57 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
MLRDRG+++GDFELAMSREQFKNQ+ EPKVSVKTVRTY+NRMKS+NVFRAILVVQEKLSSF
Subjt: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
Query: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
V EAE LVNIKDHVLI EHQLLTNEEK TLLERY VKDT QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
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| A0A6J1KT45 DNA-directed RNA polymerases II and IV subunit 5A-like | 6.4e-46 | 60.22 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
ML+DRGY +GDFE+ MSREQFKN+Y EPKV VKT++TY NRMKSENVFRAILVVQ+ L+ F
Subjt: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
Query: ----VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
V EAE LVNIKDHVL+ EHQLL+NEEK TLLERY VK+T QVTDP+ARYYG+KRGQVVKIIRPSETAGRYVTYRYVV
Subjt: ----VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| B0BNE2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 5.4e-26 | 37.89 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY----------------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLS--------
+ DRGY++ EL + E+FK Q+ EPKV +KT++ Y RM+ EN+ RA++VVQ+ ++
Subjt: MLRDRGYIIGDFELAMSREQFKNQY----------------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLS--------
Query: ----SFVV---LEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQVT-----DPIARYYGMKRGQVVKIIRPSETAGRYVTYRYV
+V+ L+ E L+NI +H L+ EH ++T EE LL RY ++++Q+ DP+ARY+G+KRGQVVKIIRPSETAGRY+TYR V
Subjt: ----SFVV---LEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQVT-----DPIARYYGMKRGQVVKIIRPSETAGRYVTYRYV
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| O81098 DNA-directed RNA polymerases II and IV subunit 5A | 1.2e-41 | 55.38 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
MLRDRGY I D EL M+++QF ++ E KV VKT++ Y NRMKSENVFRAILVVQ+ L+ F
Subjt: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
Query: ----VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
V EAE LVNIK+HVL+ EHQ+LT EEK TLLERY VK+T QVTDPIARY+G+KRGQVVKIIRPSETAGRYVTYRYVV
Subjt: ----VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
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| Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 2.1e-25 | 37.89 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY----------------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLS-----SFV
+ DRGY++ EL + E+F+ Q+ EPKV +KT++ Y RM+ EN+ RA++VVQ+ ++ S V
Subjt: MLRDRGYIIGDFELAMSREQFKNQY----------------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLS-----SFV
Query: ----------VLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQVT-----DPIARYYGMKRGQVVKIIRPSETAGRYVTYRYV
L+ E L+NI +H L+ EH ++T EE LL RY +++ Q+ DP+ARY+G+KRGQVVKIIRPSETAGRY+TYR V
Subjt: ----------VLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQVT-----DPIARYYGMKRGQVVKIIRPSETAGRYVTYRYV
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| Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 5.4e-26 | 37.89 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY----------------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLS--------
+ DRGY++ EL + E+FK Q+ EPKV +KT++ Y RM+ EN+ RA++VVQ+ ++
Subjt: MLRDRGYIIGDFELAMSREQFKNQY----------------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLS--------
Query: ----SFVV---LEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQVT-----DPIARYYGMKRGQVVKIIRPSETAGRYVTYRYV
+V+ L+ E L+NI +H L+ EH ++T EE LL RY ++++Q+ DP+ARY+G+KRGQVVKIIRPSETAGRY+TYR V
Subjt: ----SFVV---LEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQVT-----DPIARYYGMKRGQVVKIIRPSETAGRYVTYRYV
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| Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 2.7e-25 | 38.22 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY----------------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSFV-----
M+ DRGY++ EL E FK QY + K+ +KT++ +M+ +N+ RAI+VVQ ++
Subjt: MLRDRGYIIGDFELAMSREQFKNQY----------------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSFV-----
Query: ----------VLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQV-----TDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
LEAE +VNI +H L+ EH ++T EEK LL RY +KD+Q+ DP+ARY+G++RGQVVKIIRPSETAGRY+TYR VV
Subjt: ----------VLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQV-----TDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 3.2e-13 | 29.89 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQYEPKVSVKTVR----------------------TYVNRMK--------SENVFRAILVVQEKLSSFVVLEAE----
MLRDRGY + D ++ +S +QF+ Y V +R VN M+ EN+ ILV+Q +++ + E
Subjt: MLRDRGYIIGDFELAMSREQFKNQYEPKVSVKTVR----------------------TYVNRMK--------SENVFRAILVVQEKLSSFVVLEAE----
Query: ---------FLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQV-----TDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYV
LVN+ HVL +HQ+L ++EK +LL+++ +++ Q+ DPI RYYG++ GQV+K+ E + +VTYR V
Subjt: ---------FLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQV-----TDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYV
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| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 8.6e-43 | 55.38 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
MLRDRGY I D EL M+++QF ++ E KV VKT++ Y NRMKSENVFRAILVVQ+ L+ F
Subjt: MLRDRGYIIGDFELAMSREQFKNQY-----------------------------EPKVSVKTVRTYVNRMKSENVFRAILVVQEKLSSF-----------
Query: ----VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
V EAE LVNIK+HVL+ EHQ+LT EEK TLLERY VK+T QVTDPIARY+G+KRGQVVKIIRPSETAGRYVTYRYVV
Subjt: ----VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDT-----QVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
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| AT3G54490.1 RNA polymerase II fifth largest subunit, E | 3.0e-11 | 28.65 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY-----------------EPK------------VSVKTVRT-YVNRMKSENVFRAILVVQEKLSSFV---------
MLRDRGY + + EL+++ +F++ + +PK ++VK+VR ++ + + ILV+Q K++ F
Subjt: MLRDRGYIIGDFELAMSREQFKNQY-----------------EPK------------VSVKTVRT-YVNRMKSENVFRAILVVQEKLSSFV---------
Query: VLEA----EFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQV-----TDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
+E + LVNI H+ + ++L EEK LL ++ ++D Q+ D RYYG+K+ QVVKI E G +VTYR ++
Subjt: VLEA----EFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQV-----TDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
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| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 8.7e-11 | 29.35 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQYEPK-----------------------------VSVKTVRTYV-NRMKSENVFRAILVVQE----------KLSSF
MLRDRGY + D ++ +S F+ Y + V V +R+ V + + E + ILV+Q +L SF
Subjt: MLRDRGYIIGDFELAMSREQFKNQYEPK-----------------------------VSVKTVRTYV-NRMKSENVFRAILVVQE----------KLSSF
Query: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQV-----TDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYV
+ + LVNI H L +HQ+L +EEK TLL+++ +++ Q+ D I RYYG+++GQVVK+ E +V +R V
Subjt: ---VVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQV-----TDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYV
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| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 2.8e-17 | 34.21 | Show/hide |
Query: MLRDRGYIIGDFELAMSREQFKNQY--------------------------------EPKVSVKTVRTYVN-RMKSENVFRAILVV--------------
MLRDRGY I + +L + RE+F ++ PKV V ++ V +M+ + V R I+VV
Subjt: MLRDRGYIIGDFELAMSREQFKNQY--------------------------------EPKVSVKTVRTYVN-RMKSENVFRAILVV--------------
Query: -QEKLSSFVVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQ-----VTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
+ L+ V EAE + NI +H L+ ++ +L ++ K LL Y V+DTQ VTDP+ARYYG+KRGQVVKI R T+ Y TYR+ V
Subjt: -QEKLSSFVVLEAEFLVNIKDHVLILEHQLLTNEEKNTLLERYMVKDTQ-----VTDPIARYYGMKRGQVVKIIRPSETAGRYVTYRYVV
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