CuGenDBv2

Gene ID	PI0014347
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Beta-galactosidase
Genome location	chr12:14505199..14506211
RNA-Seq Expression	PI0014347
Synteny	PI0014347
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003824 - catalytic activity (molecular function)
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025363.1 Beta-galactosidase [Cucumis melo var. makuwa]

2.0e-53

43.28

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Query:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP------------
        MVSEQ  +ETLE+   +G    +T  +  A AAAV+  + +        LQ  P +    V QP AP                AH PP            
Subjt:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP------------

Query:  -------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPY
                     P  HAP+ S+                ++ VDPL  PL S       Q    R  I A E+S  + P                  + Y
Subjt:  -------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPY

Query:  VINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYS
        +  ++  STG+F+ EKLNG NYFSWSQS+ M LEGR++FGFLTGE  RP PGD  E  WKGEDS +RS LINSMEP++GKPLLYA  AKD+WDTT TLYS
Subjt:  VINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYS

Query:  NYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI
          QNASRL TLRKQVH CKQGT+DVTTYFNKLSL+
Subjt:  NYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI

TYJ98979.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.1e-53

45.19

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Query:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAPSCVAHVPP---------------PETHAPTLSN
        MVSEQ  +ETLE+       T+     +TA AA         M++    LQ  P +       P      AH  P               P  HAP+ S+
Subjt:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAPSCVAHVPP---------------PETHAPTLSN

Query:  ---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPYVINTMTQSTGSFTWEKLNGNNYF
                        ++ VDPL  PL S       Q    R  I A E+S  + P                  + Y+  ++  STG+F+ EKLNG NYF
Subjt:  ---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPYVINTMTQSTGSFTWEKLNGNNYF

Query:  SWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYSNYQNASRLCTLRKQVHECKQGTM
        SWSQS+ M LEGR++FGFLTGEI RP PGD  E  WKGEDS +RS LINSMEP++GKPLLYAT AKD+WDTT TLYS  QNASRL TLRKQVH CKQGT+
Subjt:  SWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYSNYQNASRLCTLRKQVHECKQGTM

Query:  DVTTYFNKLSLI
        DVTTYFNKLSL+
Subjt:  DVTTYFNKLSLI

TYK11240.1 Beta-galactosidase [Cucumis melo var. makuwa]

9.4e-56

43.32

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Query:  SEQGIDETLED---QTPV-GNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP----------
        SEQ  +ETLE+   +T +  +P          ++AAVDA + + M++    LQ  P +    V QP AP                AH PP          
Subjt:  SEQGIDETLED---QTPV-GNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP----------

Query:  ---------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NT
                       P  HAP+ S+                ++ VDPL  PL S       Q    R  I A E+S  + P                  +
Subjt:  ---------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NT

Query:  PYVINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTL
         Y+  ++  STG+F+ EKLNG NYFSWSQS+ M LEGR++FGFLTGEI RP PGD  E  WKGEDS +RS LINSMEP++GKPLLYAT AKD+WDTT TL
Subjt:  PYVINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTL

Query:  YSNYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI
        YS  QNASRL TLRKQVH CKQGT+DVTTYFNKLSL+
Subjt:  YSNYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI

TYK23439.1 Beta-galactosidase [Cucumis melo var. makuwa]

3.4e-58

44.48

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Query:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP------------
        MVSEQ  +ETLE+   +G    +T  +  A AAAVDA + + +++    LQ  P +    V QP AP                AH PP            
Subjt:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP------------

Query:  -------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPY
                     P  HAP+ S+                ++ VDPL  PL S       Q    R  I A E+S  + P                  + Y
Subjt:  -------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPY

Query:  VINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYS
        +  ++  STG+F+ EKLNG NYFSWSQS+ M LEGR++FGFLTGEI RP PGD  E  WKGEDS +RS LINSMEP++GKPLLYAT AKD+WDTT TLYS
Subjt:  VINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYS

Query:  NYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI
          QNASRL TLRKQVH CKQGT+DVTTYFNKLSL+
Subjt:  NYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI

TYK31050.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.1e-53

43.58

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Query:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP------------
        MVSEQ  +ETLE      N   +T +    +AAA      + M++    LQ  P +    V QP AP                AH PP            
Subjt:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP------------

Query:  -------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPY
                     P  HAP+ S+                ++ VDPL  PL S       Q    R  I A E+S  + P                  + Y
Subjt:  -------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPY

Query:  VINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYS
        +  ++  STG+F+ EKLNG NYFSWSQS+ M LEGR++FGFLTGEI RP PGD  E  WKGEDS +RS LINSMEP++GKPLLYAT AKD+WDTT TLYS
Subjt:  VINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYS

Query:  NYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI
          QNASRL TLRKQVH CKQGT+DVTTYFNKLSL+
Subjt:  NYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UGB2 Beta-galactosidase

9.5e-54

43.88

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Query:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP------------
        MVSEQ  +ETLE+     N  E  +    A AAA        M++    LQ  P +    V QP AP                AH PP            
Subjt:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP------------

Query:  -------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPY
                     P  HAP+ S+                ++ VDPL  PL S       Q    R  I A E+S  + P                  + Y
Subjt:  -------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPY

Query:  VINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYS
        +  ++  STG+F+ EKLNG NYFSWSQS+ M LEGR++FGFLTGEI RP PGD  E  WKGEDS +RS LINSMEP++GKPLLYAT AKD+WDTT TLYS
Subjt:  VINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYS

Query:  NYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI
          QNASRL TLRKQVH CKQGT+DVTTYFNKLSL+
Subjt:  NYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI

A0A5D3BIZ4 Beta-galactosidase

5.6e-54

45.19

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Query:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAPSCVAHVPP---------------PETHAPTLSN
        MVSEQ  +ETLE+       T+     +TA AA         M++    LQ  P +       P      AH  P               P  HAP+ S+
Subjt:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAPSCVAHVPP---------------PETHAPTLSN

Query:  ---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPYVINTMTQSTGSFTWEKLNGNNYF
                        ++ VDPL  PL S       Q    R  I A E+S  + P                  + Y+  ++  STG+F+ EKLNG NYF
Subjt:  ---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPYVINTMTQSTGSFTWEKLNGNNYF

Query:  SWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYSNYQNASRLCTLRKQVHECKQGTM
        SWSQS+ M LEGR++FGFLTGEI RP PGD  E  WKGEDS +RS LINSMEP++GKPLLYAT AKD+WDTT TLYS  QNASRL TLRKQVH CKQGT+
Subjt:  SWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYSNYQNASRLCTLRKQVHECKQGTM

Query:  DVTTYFNKLSLI
        DVTTYFNKLSL+
Subjt:  DVTTYFNKLSLI

A0A5D3CIR0 Beta-galactosidase

4.5e-56

43.32

Show/hide

Query:  SEQGIDETLED---QTPV-GNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP----------
        SEQ  +ETLE+   +T +  +P          ++AAVDA + + M++    LQ  P +    V QP AP                AH PP          
Subjt:  SEQGIDETLED---QTPV-GNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP----------

Query:  ---------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NT
                       P  HAP+ S+                ++ VDPL  PL S       Q    R  I A E+S  + P                  +
Subjt:  ---------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NT

Query:  PYVINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTL
         Y+  ++  STG+F+ EKLNG NYFSWSQS+ M LEGR++FGFLTGEI RP PGD  E  WKGEDS +RS LINSMEP++GKPLLYAT AKD+WDTT TL
Subjt:  PYVINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTL

Query:  YSNYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI
        YS  QNASRL TLRKQVH CKQGT+DVTTYFNKLSL+
Subjt:  YSNYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI

A0A5D3DJM7 Beta-galactosidase

1.7e-58

44.48

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Query:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP------------
        MVSEQ  +ETLE+   +G    +T  +  A AAAVDA + + +++    LQ  P +    V QP AP                AH PP            
Subjt:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP------------

Query:  -------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPY
                     P  HAP+ S+                ++ VDPL  PL S       Q    R  I A E+S  + P                  + Y
Subjt:  -------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPY

Query:  VINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYS
        +  ++  STG+F+ EKLNG NYFSWSQS+ M LEGR++FGFLTGEI RP PGD  E  WKGEDS +RS LINSMEP++GKPLLYAT AKD+WDTT TLYS
Subjt:  VINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYS

Query:  NYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI
          QNASRL TLRKQVH CKQGT+DVTTYFNKLSL+
Subjt:  NYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI

A0A5D3E603 Beta-galactosidase

5.6e-54

43.58

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Query:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP------------
        MVSEQ  +ETLE      N   +T +    +AAA      + M++    LQ  P +    V QP AP                AH PP            
Subjt:  MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAP-------------SCVAHVPP------------

Query:  -------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPY
                     P  HAP+ S+                ++ VDPL  PL S       Q    R  I A E+S  + P                  + Y
Subjt:  -------------PETHAPTLSN---------------HKMSVDPLLPPLPSSATATHQQLEELRQQIAAIEASLRATP-----------------NTPY

Query:  VINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYS
        +  ++  STG+F+ EKLNG NYFSWSQS+ M LEGR++FGFLTGEI RP PGD  E  WKGEDS +RS LINSMEP++GKPLLYAT AKD+WDTT TLYS
Subjt:  VINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWDTTWTLYS

Query:  NYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI
          QNASRL TLRKQVH CKQGT+DVTTYFNKLSL+
Subjt:  NYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

2.6e-11

27.46

Show/hide

Query:  PNTPYVINTMTQSTGSFTWEKL--NGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWD
        P++PY +         F+ +KL  + +NY +W       L    KFGF+ G +P+P P  P    W+  ++ +   L+NSM  K+ + ++YA  A  +W+
Subjt:  PNTPYVINTMTQSTGSFTWEKL--NGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKDIWD

Query:  TTWTLYSNYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI
            ++    +  ++  LR+++   +QG   V  YF KLS +
Subjt:  TTWTLYSNYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTATCAGAGCAAGGAATCGATGAAACCCTAGAAGATCAAACACCTGTTGGAAACCCAACGGAGGACACAGTTGTAATTATTACCGCCGTCGCCGCCGCCGTTGATGC
TCGGATTGGATCTATCATGGACGAATGGTTTTGCCGTCTTCAGACTACACCGGCCTTCCAAAATCTAGCAGTTTTTCAGCCGAACGCACCTTCATGCGTCGCCCACGTGC
CGCCGCCAGAGACCCACGCGCCTACCCTTTCTAATCATAAAATGTCGGTCGATCCTCTCCTGCCACCCTTACCTTCATCCGCAACTGCCACTCACCAGCAATTGGAAGAG
CTTCGACAGCAGATTGCAGCAATTGAGGCTTCTTTAAGGGCAACACCCAACACTCCTTATGTGATTAATACAATGACACAATCTACAGGGTCCTTCACATGGGAAAAGTT
AAACGGCAATAACTATTTCTCATGGTCTCAATCAGTGATAATGGTCCTCGAAGGGCGGCATAAGTTTGGTTTTCTGACAGGGGAAATACCTCGTCCTTCACCTGGAGACC
CACAAGAATGGTATTGGAAGGGAGAGGATTCTTTTCTTCGATCCACACTGATCAATAGCATGGAGCCAAAGGTCGGAAAACCTTTATTATATGCTACAATTGCTAAGGAC
ATTTGGGACACAACCTGGACATTATATTCCAACTATCAAAATGCCTCTCGCCTATGCACATTACGGAAACAGGTTCATGAGTGCAAGCAAGGGACCATGGATGTTACAAC
CTATTTTAACAAGCTCTCTCTTATCTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MVSEQGIDETLEDQTPVGNPTEDTVVIITAVAAAVDARIGSIMDEWFCRLQTTPAFQNLAVFQPNAPSCVAHVPPPETHAPTLSNHKMSVDPLLPPLPSSATATHQQLEE
LRQQIAAIEASLRATPNTPYVINTMTQSTGSFTWEKLNGNNYFSWSQSVIMVLEGRHKFGFLTGEIPRPSPGDPQEWYWKGEDSFLRSTLINSMEPKVGKPLLYATIAKD
IWDTTWTLYSNYQNASRLCTLRKQVHECKQGTMDVTTYFNKLSLI

PI0014347 (gene) of Melon (PI 482460) v1 genome