CuGenDBv2

Gene ID	PI0014349
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	50S ribosomal protein L23, chloroplastic
Genome location	chr05:18950765..18951046
RNA-Seq Expression	PI0014349
Synteny	PI0014349
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001014 - Ribosomal protein L23/L25, conserved site IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

YP_009473928.1 ribosomal protein L23 [Flacourtia indica]

2.5e-40

91.4

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGRRMRPIMGHTMHYRRM+ITLQ GYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

YP_009557356.1 ribosomal protein L23 [Halophytum ameghinoi]

1.9e-40

91.4

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVES STR +IKHWVELFFGVK+IAMNSHRLPRKGRRM PIMGHTMHYRRM+ITLQSGYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

YP_009570400.1 ribosomal protein L23 [Anredera cordifolia]

2.5e-40

91.4

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVES STR +IKHWVELFFGVK+IAMNSHRLPRKGRRM PIMGHTMHYRRM+ITLQSGYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

YP_009573518.1 ribosomal protein L23 [Azara serrata]

6.7e-41

92.47

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGRRMRPIMGHTMHYRRM+ITLQSGYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

YP_009767871.1 ribosomal protein L23 [Dermatophyllum secundiflorum]

2.5e-40

91.4

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        M+GIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGRRMRPIMGHTMHYRRM+ITLQSGYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

TrEMBL top hits

e value

%identity

Alignment

A0A411K440 Ribosomal protein L23

9.4e-41

91.4

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVES STR +IKHWVELFFGVK+IAMNSHRLPRKGRRM PIMGHTMHYRRM+ITLQSGYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

A0A482EVN3 50S ribosomal protein L23, chloroplastic

3.2e-41

92.47

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGRRMRPIMGHTMHYRRM+ITLQSGYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

A0A650FC08 50S ribosomal protein L23, chloroplastic

1.2e-40

91.4

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGRRMRPIMGHTMHYRRM+ITLQ GYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

A0A6C0SM69 50S ribosomal protein L23, chloroplastic

1.2e-40

91.4

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGRRMRPIMGHTMHYRRM+ITLQ GYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

G0YDX1 50S ribosomal protein L23, chloroplastic

3.2e-41

92.47

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGRRMRPIMGHTMHYRRM+ITLQSGYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

SwissProt top hits

e value

%identity

Alignment

Q06R67 50S ribosomal protein L23, chloroplastic

6.3e-42

89.25

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGRRM PIMGHTMHYRRM+ITLQ GYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

Q09MB3 50S ribosomal protein L23, chloroplastic

4.8e-42

89.25

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSH+LPRKGRRM PIM HTMHYRRM+ITLQ GYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

Q0PUX7 50S ribosomal protein L23, chloroplastic

8.2e-42

89.25

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGRRM P MGHTMHYRRM+ITLQ GYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

Q0ZIV5 50S ribosomal protein L23, chloroplastic

2.2e-42

90.32

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGRRM PIMGHTMHYRRM+ITLQ GYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

Q4VZK6 50S ribosomal protein L23, chloroplastic

2.2e-42

90.32

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGRRM PIMGHTMHYRRM+ITLQ GYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00840.1 ribosomal protein L23.1

4.2e-41

86.02

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYT NVES STRT+IKHWVELFFGVK+IAMNSHRLP K +RM PI+GHTMHYRRM+ITLQ GYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

ATCG01300.1 ribosomal protein L23

4.2e-41

86.02

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYT NVES STRT+IKHWVELFFGVK+IAMNSHRLP K +RM PI+GHTMHYRRM+ITLQ GYS  PLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAAGATCAACTAGGACAAAAATAAAGCA
TTGGGTCGAACTCTTCTTTGGTGTCAAGATAATAGCTATGAATAGTCATCGGCTCCCGAGAAAGGGTAGAAGAATGAGACCTATTATGGGACATACAATGCATTACAGAC
GTATGGTCATTACGCTTCAATCGGGTTATTCTACTCGACCTCTTAGAAAGAAAAGAACTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

PI0014349 (gene) of Melon (PI 482460) v1 genome