; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0014365 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0014365
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:13387463..13397780
RNA-Seq ExpressionPI0014365
SyntenyPI0014365
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.8e-6164.89Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGV GL+GHPNDKCP+++E+ N++ KYDPHGNTYN+GWRDNPNLRW ND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN
         +MKQQM+QLT A+SK++GKGKL AQ ++ANVSA+SLRS KIL+TP + E+K  S P+ L  +N+ KEE +E N S  +SK  +F LN
Subjt:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-6266.49Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGV GL+GHPNDKCP+++E+ N++ KYDPHGNTYN+GWRDNPNLRW ND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN
         +MKQQM+QLT  +SK++GKGKLLAQPDHANVS ISLRSDKIL+TP + E+KV S P+ L  +N+ KEE  E N S S+SK  +  LN
Subjt:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN

KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-5964.89Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGV GL+GHPNDK P+++E+ N++ +YDPHGNTYN+GWRDNP LRW ND Q+ IQA S+S+NQG+NLED++KALA NT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN
         +MKQQM+QLT A+SK++GKGKL AQP+HANVSAISLRS KIL+TP + E+KV S  + L  +N+ KEEN+E N S S+ K  +  LN
Subjt:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]1.3e-6065.43Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGV GL+G+PNDKCP ++E+ N++ +YDPHGNTYN GWRDNPNLRW ND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN
         KMKQQM+QLT  +SK++GKGKL AQPDH NVSAISLRS KIL+TP + E+KV S  + L  +N+ KEE +E N SSS+SK  +  LN
Subjt:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]1.1e-6266.49Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGV GL+GHPNDKCP+++E+ N++ KYDPHGNTYN+GWRDNPNLRW ND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN
         +MKQQM+QLT  +SK++GKGKLLAQPDHANVS ISLRSDKIL+TP + E+KV S P+ L  +N+ KEE  E N S S+SK  +  LN
Subjt:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032916.3e-6165.43Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGV GL+G+PNDKCP ++E+ N++ +YDPHGNTYN GWRDNPNLRW ND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN
         KMKQQM+QLT  +SK++GKGKL AQPDH NVSAISLRS KIL+TP + E+KV S  + L  +N+ KEE +E N SSS+SK  +  LN
Subjt:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN

A0A1S4E3R2 uncharacterized protein LOC1079919105.1e-6366.49Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGV GL+GHPNDKCP+++E+ N++ KYDPHGNTYN+GWRDNPNLRW ND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN
         +MKQQM+QLT  +SK++GKGKLLAQPDHANVS ISLRSDKIL+TP + E+KV S P+ L  +N+ KEE  E N S S+SK  +  LN
Subjt:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN

A0A5A7VE49 Retrotransposon gag protein6.9e-6064.89Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGV GL+GHPNDK P+++E+ N++ +YDPHGNTYN+GWRDNP LRW ND Q+ IQA S+S+NQG+NLED++KALA NT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN
         +MKQQM+QLT A+SK++GKGKL AQP+HANVSAISLRS KIL+TP + E+KV S  + L  +N+ KEEN+E N S S+ K  +  LN
Subjt:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN

A0A5D3CRR8 Retrotransposon gag protein2.8e-6164.89Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGV GL+GHPNDKCP+++E+ N++ KYDPHGNTYN+GWRDNPNLRW ND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN
         +MKQQM+QLT A+SK++GKGKL AQ ++ANVSA+SLRS KIL+TP + E+K  S P+ L  +N+ KEE +E N S  +SK  +F LN
Subjt:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN

A0A5D3DCG3 Retrotransposon gag protein5.1e-6366.49Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGV GL+GHPNDKCP+++E+ N++ KYDPHGNTYN+GWRDNPNLRW ND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN
         +MKQQM+QLT  +SK++GKGKLLAQPDHANVS ISLRSDKIL+TP + E+KV S P+ L  +N+ KEE  E N S S+SK  +  LN
Subjt:  NKMKQQMSQLTNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPS-EEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACATTGCTCACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTATGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTTGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGCAAATGACGCCCAACGACCCATACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCCACCAACACAATTTCTTTCCAAAATAAAATGAAGCAACAAATGTCCCAATTG
ACTAATGCAGTAAGCAAACTAGAAGGTAAAGGCAAGCTTCTAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGATAAAATTCTGGAAACCCCTCC
AAGTGAGGAAAAGGTACCATCTATCCCTATCCTTCTAGTAGATGAAAATAAGAAAAAGGAAGAAAATTTAGAAAACAATGACTCTTCTTCTTCTTCAAAAGAAGTTCAAT
TTCAGTTGAATTGTGCGTTCAAACCCGAAGAATGTGAGAACAAGTTTATGAGTGACGGTGAACAACCACAATTTGAACTTGACCCTGAAATTGAGCGAACCTTTCAGTGT
AATCGACGAAGAGCAAGGCAAAGACAAGCAAGGAGAATGGAAAACAAGAACAGAAATGCCCCTCCGCCGCAAGCTGCCCCAGAACCAAACGCCGCCTACATGGCACATGA
CTTGGATAGACCGATTAGATCGTATGCGGCACCTAACCTCTACAACTTCAACCCAGGGATCGCTTACCCTGTGTTCGGCGGAAATGCTAGAGAAGATCCACATGAACATA
TTTGGAGTTTTTACTCTATCTGTGCGTCCTTCCATATGCTAGGCATCTCACCTGAGGAACTGAGATTCACCCTCTTCCCGTTAACTCTGAGGGACGAGGCGAAGAGGTGG
GCCAACACCTTGGAAGATGGCGAGGCTACACAGCAGACTGCTGATGCTGTGTTTGTAGGTGGTATGCTAAAGAGCTCCTACAACCAGATTAAGGCGACGTTGGACACAAT
GGCTAGCAACAATGAAGAATGGGATGAAGATGATTTCGACAATCGCCGAGGAGGACGATCAAGAGGCGATGAAGGCATGGATAAGAACGTCGTGGTGGCGTTGCAAGGGC
AAATGACAGCGATGAACAATCTACTCAAGTCTATGGAAATATCCCAAGTCAATGCCGTGGGAGGCTCTATGCACGCGGCAAACCAAATTGATGATATGGGATGTGTGGGA
TGCGGCGGTTCTCATAATACTGACGCATGCCCACTTAACATTGAAATAGTCGCGTTTCTCGCCAGCGATGTCTCCAGAAGACCACAGGGATCTCTCCCAAGCAATACAGA
AATGCCAAATCAGGAGGGGGGATCTGGTAAAGAGAAGTGTCACGCGGTGACACTGCGCAGCGGAAGGAATTTAACGATCCGCGAGCCTTATTCTGAACGTAGCCACTCCA
CTTCTAATTCTACTACCGAGATCGACAGCTCAAGGGAATTAACTCTGCATTTGAATGATGAGGATATCAAGTTCAATGTCGCAAACGCAGTGAAATTCCCTTATGATGAA
AGCTGCAACGCAATAGAATCCTTCAGTTGGGATTATTGCGAGGAAGAAGCTTCTATGTTGCTCAACCCTGAAAAATTCTTTGAAGATCTACAAGGAACAGAAAGTCTTAA
CGCCGTGTCTGGCGAAAGGAAATCAGAACCTTTGGGTATGTCAACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACATTGCTCACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTATGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTTGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGCAAATGACGCCCAACGACCCATACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCCACCAACACAATTTCTTTCCAAAATAAAATGAAGCAACAAATGTCCCAATTG
ACTAATGCAGTAAGCAAACTAGAAGGTAAAGGCAAGCTTCTAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGATAAAATTCTGGAAACCCCTCC
AAGTGAGGAAAAGGTACCATCTATCCCTATCCTTCTAGTAGATGAAAATAAGAAAAAGGAAGAAAATTTAGAAAACAATGACTCTTCTTCTTCTTCAAAAGAAGTTCAAT
TTCAGTTGAATTGTGCGTTCAAACCCGAAGAATGTGAGAACAAGTTTATGAGTGACGGTGAACAACCACAATTTGAACTTGACCCTGAAATTGAGCGAACCTTTCAGTGT
AATCGACGAAGAGCAAGGCAAAGACAAGCAAGGAGAATGGAAAACAAGAACAGAAATGCCCCTCCGCCGCAAGCTGCCCCAGAACCAAACGCCGCCTACATGGCACATGA
CTTGGATAGACCGATTAGATCGTATGCGGCACCTAACCTCTACAACTTCAACCCAGGGATCGCTTACCCTGTGTTCGGCGGAAATGCTAGAGAAGATCCACATGAACATA
TTTGGAGTTTTTACTCTATCTGTGCGTCCTTCCATATGCTAGGCATCTCACCTGAGGAACTGAGATTCACCCTCTTCCCGTTAACTCTGAGGGACGAGGCGAAGAGGTGG
GCCAACACCTTGGAAGATGGCGAGGCTACACAGCAGACTGCTGATGCTGTGTTTGTAGGTGGTATGCTAAAGAGCTCCTACAACCAGATTAAGGCGACGTTGGACACAAT
GGCTAGCAACAATGAAGAATGGGATGAAGATGATTTCGACAATCGCCGAGGAGGACGATCAAGAGGCGATGAAGGCATGGATAAGAACGTCGTGGTGGCGTTGCAAGGGC
AAATGACAGCGATGAACAATCTACTCAAGTCTATGGAAATATCCCAAGTCAATGCCGTGGGAGGCTCTATGCACGCGGCAAACCAAATTGATGATATGGGATGTGTGGGA
TGCGGCGGTTCTCATAATACTGACGCATGCCCACTTAACATTGAAATAGTCGCGTTTCTCGCCAGCGATGTCTCCAGAAGACCACAGGGATCTCTCCCAAGCAATACAGA
AATGCCAAATCAGGAGGGGGGATCTGGTAAAGAGAAGTGTCACGCGGTGACACTGCGCAGCGGAAGGAATTTAACGATCCGCGAGCCTTATTCTGAACGTAGCCACTCCA
CTTCTAATTCTACTACCGAGATCGACAGCTCAAGGGAATTAACTCTGCATTTGAATGATGAGGATATCAAGTTCAATGTCGCAAACGCAGTGAAATTCCCTTATGATGAA
AGCTGCAACGCAATAGAATCCTTCAGTTGGGATTATTGCGAGGAAGAAGCTTCTATGTTGCTCAACCCTGAAAAATTCTTTGAAGATCTACAAGGAACAGAAAGTCTTAA
CGCCGTGTCTGGCGAAAGGAAATCAGAACCTTTGGGTATGTCAACCTGA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGNVKVAKCGVYGLIGHPNDKCPDLVEEANVIWKYDPHGNTYNAGWRDNPNLRWANDAQRPIQATSSSNNQGSNLEDLVKALATNTISFQNKMKQQMSQL
TNAVSKLEGKGKLLAQPDHANVSAISLRSDKILETPPSEEKVPSIPILLVDENKKKEENLENNDSSSSSKEVQFQLNCAFKPEECENKFMSDGEQPQFELDPEIERTFQC
NRRRARQRQARRMENKNRNAPPPQAAPEPNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGGNAREDPHEHIWSFYSICASFHMLGISPEELRFTLFPLTLRDEAKRW
ANTLEDGEATQQTADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNRRGGRSRGDEGMDKNVVVALQGQMTAMNNLLKSMEISQVNAVGGSMHAANQIDDMGCVG
CGGSHNTDACPLNIEIVAFLASDVSRRPQGSLPSNTEMPNQEGGSGKEKCHAVTLRSGRNLTIREPYSERSHSTSNSTTEIDSSRELTLHLNDEDIKFNVANAVKFPYDE
SCNAIESFSWDYCEEEASMLLNPEKFFEDLQGTESLNAVSGERKSEPLGMST