CuGenDBv2

Gene ID	PI0014379
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	primase homolog protein isoform X1
Genome location	chr12:8611834..8618726
RNA-Seq Expression	PI0014379
Synteny	PI0014379
Gene Ontology terms	GO:0032508 - DNA duplex unwinding (biological process) GO:0003697 - single-stranded DNA binding (molecular function) GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domains	IPR006171 - TOPRIM domain IPR027032 - Twinkle-like protein IPR034154 - Archaeal primase DnaG/twinkle, TOPRIM domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008445790.1 PREDICTED: primase homolog protein isoform X2 [Cucumis melo]

4.6e-202

93.75

Show/hide

Query:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFSVSSSPSRF-LGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNF FKFIHRSSP S  LNNFS+SSSPSRF L FCTTRLSSA+SHAPP P PVKVL +KMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFSVSSSPSRF-LGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGRQVAIAFTY
        LMERSLSLHVIPTGDFAMWRCF+FECGWAGRIFADGRLAFNGFSKT KMVGRSSKESLVLEPLCDELISYF  RMISQETLERNVVMQ+ GRQVAIAFTY
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGRQVAIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDT+P IEKD+AYQYLW CKDYLDKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR

Query:  IILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
        IILATDSD PGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
Subjt:  IILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL

XP_011659247.1 primase homolog protein isoform X1 [Cucumis sativus]

8.6e-201

92.39

Show/hide

Query:  MPINSTFTFNSNFNFKFKFI-HRSSPFSHPLNNFSVSSSPSRFLGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNF+FKFI HRS PFSH LNNFS+SSSPSRFL FCTTRLSSAVSHAPPSP PVK LM++MDL+GIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFKFKFI-HRSSPFSHPLNNFSVSSSPSRFLGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGRQVAIAFTY
        LMERSLSLHVIPTGDFAMWRCFQFECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYF  RMISQETLERNVVMQ+AGRQV IAFTY
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGRQVAIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDTVP IEKDTAYQYLWSCKDYLDKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR

Query:  IILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
        +ILATDSD PGQALAEELARRLGK+RCWRV WPYKDGFNRFKDANEVLVHLGPDALK AI+DAKFYQL
Subjt:  IILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL

XP_016899150.1 PREDICTED: primase homolog protein isoform X1 [Cucumis melo]

1.1e-200

93.5

Show/hide

Query:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFSVSSSPSRF-LGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNF FKFIHRSSP S  LNNFS+SSSPSRF L FCTTRLSSA+SHAPP P PVKVL +KMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFSVSSSPSRF-LGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGR-QVAIAFT
        LMERSLSLHVIPTGDFAMWRCF+FECGWAGRIFADGRLAFNGFSKT KMVGRSSKESLVLEPLCDELISYF  RMISQETLERNVVMQ+ GR QVAIAFT
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGR-QVAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDT+P IEKD+AYQYLW CKDYLDKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS

Query:  RIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
        RIILATDSD PGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
Subjt:  RIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL

XP_016899151.1 PREDICTED: primase homolog protein isoform X3 [Cucumis melo]

2.4e-187

89.7

Show/hide

Query:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFSVSSSPSRF-LGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNF FKFIHRSSP S  LNNFS+SSSPSRF L FCTTRLSSA+SHAPP P PVKVL +KMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFSVSSSPSRF-LGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGR-QVAIAFT
        LMERSLSLHVIPTGDFAMWRCF+FECGWAGRIFADGRLAFNGFSKT KMVGRSSKESLVLEPLCDELISYF  RMISQETLERNVVMQ+ GR QVAIAFT
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGR-QVAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDT+P IE                KVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS

Query:  RIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
        RIILATDSD PGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
Subjt:  RIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL

XP_038893950.1 primase homolog protein isoform X1 [Benincasa hispida]

5.3e-190

89.16

Show/hide

Query:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFS--VSSSPSRFLGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGG
        M  N+TF  N NFNF   F HRS PFSHP N+FS   SSSPSRFL FCTTR SSAVSH PPSP PVKVLM+KMDLIGIVCDEHC PGKYYCLFCPKCKGG
Subjt:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFS--VSSSPSRFLGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGG

Query:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGRQVAIAFT
        R +ERSLSLHVIPTGDFAMWRCFQ ECGWAGRIFADGRLAFNGFS+TVK VGRS++ESLVLEPL DELISYF KRMISQETLERNVVMQIAGRQVAIAFT
Subjt:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGRQVAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGT K LYGIDDINDA+ELIIVEGEMDKLSVEEAG LNCISVPGGAPSKVSTDTVPS EKDTAYQYLWSCKDYLDKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS

Query:  RIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
        RIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKD FNRFKDANE+L+HLGPDALKNAIQDAKFY+L
Subjt:  RIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LYN4 Toprim domain-containing protein

4.2e-201

92.39

Show/hide

Query:  MPINSTFTFNSNFNFKFKFI-HRSSPFSHPLNNFSVSSSPSRFLGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNF+FKFI HRS PFSH LNNFS+SSSPSRFL FCTTRLSSAVSHAPPSP PVK LM++MDL+GIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFKFKFI-HRSSPFSHPLNNFSVSSSPSRFLGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGRQVAIAFTY
        LMERSLSLHVIPTGDFAMWRCFQFECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYF  RMISQETLERNVVMQ+AGRQV IAFTY
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGRQVAIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDTVP IEKDTAYQYLWSCKDYLDKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR

Query:  IILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
        +ILATDSD PGQALAEELARRLGK+RCWRV WPYKDGFNRFKDANEVLVHLGPDALK AI+DAKFYQL
Subjt:  IILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL

A0A1S3BDI8 primase homolog protein isoform X2

2.2e-202

93.75

Show/hide

Query:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFSVSSSPSRF-LGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNF FKFIHRSSP S  LNNFS+SSSPSRF L FCTTRLSSA+SHAPP P PVKVL +KMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFSVSSSPSRF-LGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGRQVAIAFTY
        LMERSLSLHVIPTGDFAMWRCF+FECGWAGRIFADGRLAFNGFSKT KMVGRSSKESLVLEPLCDELISYF  RMISQETLERNVVMQ+ GRQVAIAFTY
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGRQVAIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDT+P IEKD+AYQYLW CKDYLDKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSR

Query:  IILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
        IILATDSD PGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
Subjt:  IILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL

A0A1S4DT27 primase homolog protein isoform X4

2.0e-187

93.08

Show/hide

Query:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFSVSSSPSRF-LGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNF FKFIHRSSP S  LNNFS+SSSPSRF L FCTTRLSSA+SHAPP P PVKVL +KMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFSVSSSPSRF-LGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGR-QVAIAFT
        LMERSLSLHVIPTGDFAMWRCF+FECGWAGRIFADGRLAFNGFSKT KMVGRSSKESLVLEPLCDELISYF  RMISQETLERNVVMQ+ GR QVAIAFT
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGR-QVAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDT+P IEKD+AYQYLW CKDYLDKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS

Query:  RIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANE
        RIILATDSD PGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANE
Subjt:  RIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANE

A0A1S4DT34 primase homolog protein isoform X3

1.2e-187

89.7

Show/hide

Query:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFSVSSSPSRF-LGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNF FKFIHRSSP S  LNNFS+SSSPSRF L FCTTRLSSA+SHAPP P PVKVL +KMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFSVSSSPSRF-LGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGR-QVAIAFT
        LMERSLSLHVIPTGDFAMWRCF+FECGWAGRIFADGRLAFNGFSKT KMVGRSSKESLVLEPLCDELISYF  RMISQETLERNVVMQ+ GR QVAIAFT
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGR-QVAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDT+P IE                KVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS

Query:  RIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
        RIILATDSD PGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
Subjt:  RIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL

A0A1S4DTX2 primase homolog protein isoform X1

5.5e-201

93.5

Show/hide

Query:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFSVSSSPSRF-LGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNF FKFIHRSSP S  LNNFS+SSSPSRF L FCTTRLSSA+SHAPP P PVKVL +KMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFSVSSSPSRF-LGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGR-QVAIAFT
        LMERSLSLHVIPTGDFAMWRCF+FECGWAGRIFADGRLAFNGFSKT KMVGRSSKESLVLEPLCDELISYF  RMISQETLERNVVMQ+ GR QVAIAFT
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGR-QVAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDT+P IEKD+AYQYLW CKDYLDKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVS

Query:  RIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
        RIILATDSD PGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
Subjt:  RIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL

SwissProt top hits

e value

%identity

Alignment

B5X582 Twinkle homolog protein, chloroplastic/mitochondrial

1.3e-90

55.71

Show/hide

Query:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQET
        E+C PG++  L CP C+GG   E+SLSL + P G  A W CF+ +CG  G + ADG LA        K+  + + E + LEPLCDE+  YF  R IS++T
Subjt:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQET

Query:  LERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSI
        LERN VMQ   G ++ IAFTY Q G+LV CKYR++ K F+QE+ T + LYG+DDI    E+IIVEGE+DKL++EEAGFLNC+SVP GAP+KVS+  +PS 
Subjt:  LERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSI

Query:  EKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
        +KDT Y++LW+C DYL K SRI++ATD D PGQA+AEE+ARRLGK RCWRV WP K     FKDANEVL+  GP  LK AI DA+ Y +
Subjt:  EKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL

F4I6E6 Primase homolog protein

9.6e-86

53.31

Show/hide

Query:  LMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDEL
        LM+K+   GI   ++C PG   CL CPKC+ G   E+SL+L++ P G  A W C + +CG  G +  DG+L         K+  + + ES+ LEPLCDE+
Subjt:  LMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDEL

Query:  ISYFCKRMISQETLERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGG
          +F  R IS +TLERN VMQ     ++ IAFTY Q G+LV CKYR++ K+F QE+ T K LYG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP G
Subjt:  ISYFCKRMISQETLERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGG

Query:  APSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFY
        AP  VS+  +PS  KDTA++Y+W+C DYL K SRI++ATD D PGQALAEELARRLGK RCW V WP K     FKDANEVL+  GP  LK AI +A+ Y
Subjt:  APSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFY

Query:  QL
         L
Subjt:  QL

Arabidopsis top hits

e value

%identity

Alignment

AT1G30660.1 nucleic acid binding;nucleic acid binding

6.8e-87

53.31

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Query:  LMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDEL
        LM+K+   GI   ++C PG   CL CPKC+ G   E+SL+L++ P G  A W C + +CG  G +  DG+L         K+  + + ES+ LEPLCDE+
Subjt:  LMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDEL

Query:  ISYFCKRMISQETLERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGG
          +F  R IS +TLERN VMQ     ++ IAFTY Q G+LV CKYR++ K+F QE+ T K LYG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP G
Subjt:  ISYFCKRMISQETLERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGG

Query:  APSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFY
        AP  VS+  +PS  KDTA++Y+W+C DYL K SRI++ATD D PGQALAEELARRLGK RCW V WP K     FKDANEVL+  GP  LK AI +A+ Y
Subjt:  APSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFY

Query:  QL
         L
Subjt:  QL

AT1G30680.1 toprim domain-containing protein

9.2e-92

55.71

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Query:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQET
        E+C PG++  L CP C+GG   E+SLSL + P G  A W CF+ +CG  G + ADG LA        K+  + + E + LEPLCDE+  YF  R IS++T
Subjt:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQET

Query:  LERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSI
        LERN VMQ   G ++ IAFTY Q G+LV CKYR++ K F+QE+ T + LYG+DDI    E+IIVEGE+DKL++EEAGFLNC+SVP GAP+KVS+  +PS 
Subjt:  LERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSI

Query:  EKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
        +KDT Y++LW+C DYL K SRI++ATD D PGQA+AEE+ARRLGK RCWRV WP K     FKDANEVL+  GP  LK AI DA+ Y +
Subjt:  EKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCAATAAACTCAACTTTCACTTTCAATTCCAATTTCAACTTCAAATTCAAATTCATTCATCGCTCTTCCCCTTTCTCTCATCCTCTAAACAATTTCTCCGTCTCCTC
TTCCCCTTCCCGATTCCTTGGGTTCTGCACTACCAGACTATCTTCCGCCGTTTCTCATGCTCCACCGTCGCCGCTGCCAGTGAAGGTTCTTATGAAGAAGATGGATCTTA
TTGGAATCGTCTGTGATGAACATTGTATCCCTGGAAAATATTATTGCCTCTTCTGTCCTAAGTGCAAGGGTGGTCGTTTAATGGAGAGGAGCTTATCTCTTCATGTGATT
CCAACTGGAGATTTTGCAATGTGGAGGTGTTTCCAGTTTGAGTGTGGTTGGGCAGGCCGGATTTTTGCAGATGGCAGATTGGCATTTAATGGATTCAGCAAAACTGTAAA
AATGGTTGGAAGGAGTTCAAAGGAAAGTTTGGTTTTGGAGCCTCTTTGTGATGAGCTAATCTCTTATTTCTGCAAGAGAATGATATCCCAAGAAACCTTAGAACGGAATG
TTGTAATGCAAATAGCTGGTCGTCAGGTTGCTATTGCATTTACTTATCGTCAAAATGGACAGCTTGTCGGTTGCAAGTACCGAACCATGGACAAGAGATTTTGGCAGGAG
AAGGGTACAGCAAAGTTCCTGTATGGGATTGATGACATTAATGATGCAGATGAACTCATCATTGTCGAAGGTGAAATGGATAAACTTTCAGTTGAAGAAGCTGGTTTCCT
GAATTGTATCAGTGTTCCTGGTGGTGCTCCAAGCAAGGTTTCAACTGATACAGTTCCATCAATTGAAAAGGATACTGCATACCAATATTTATGGAGCTGCAAAGACTACT
TAGATAAGGTTTCCCGCATTATCTTGGCCACTGATAGCGATGAACCGGGGCAAGCTTTGGCAGAAGAGCTAGCGCGTCGTCTTGGAAAACACAGATGTTGGCGAGTAGAT
TGGCCATATAAAGATGGCTTCAACCGTTTTAAAGATGCCAATGAGGTTCTAGTGCACTTGGGACCAGATGCTTTGAAGAACGCAATTCAAGATGCCAAGTTTTATCAACT
TTGA

mRNA sequence

Show/hide mRNA sequence

GAAAACCTTGTGTGTGTGTGTGTGAAGCAGATAAGGCCGCTTCCACTCTGCTCTTCCATTTCTCTCCAAATCCATTGAATTCAAATGCCAATAAACTCAACTTTCACTTT
CAATTCCAATTTCAACTTCAAATTCAAATTCATTCATCGCTCTTCCCCTTTCTCTCATCCTCTAAACAATTTCTCCGTCTCCTCTTCCCCTTCCCGATTCCTTGGGTTCT
GCACTACCAGACTATCTTCCGCCGTTTCTCATGCTCCACCGTCGCCGCTGCCAGTGAAGGTTCTTATGAAGAAGATGGATCTTATTGGAATCGTCTGTGATGAACATTGT
ATCCCTGGAAAATATTATTGCCTCTTCTGTCCTAAGTGCAAGGGTGGTCGTTTAATGGAGAGGAGCTTATCTCTTCATGTGATTCCAACTGGAGATTTTGCAATGTGGAG
GTGTTTCCAGTTTGAGTGTGGTTGGGCAGGCCGGATTTTTGCAGATGGCAGATTGGCATTTAATGGATTCAGCAAAACTGTAAAAATGGTTGGAAGGAGTTCAAAGGAAA
GTTTGGTTTTGGAGCCTCTTTGTGATGAGCTAATCTCTTATTTCTGCAAGAGAATGATATCCCAAGAAACCTTAGAACGGAATGTTGTAATGCAAATAGCTGGTCGTCAG
GTTGCTATTGCATTTACTTATCGTCAAAATGGACAGCTTGTCGGTTGCAAGTACCGAACCATGGACAAGAGATTTTGGCAGGAGAAGGGTACAGCAAAGTTCCTGTATGG
GATTGATGACATTAATGATGCAGATGAACTCATCATTGTCGAAGGTGAAATGGATAAACTTTCAGTTGAAGAAGCTGGTTTCCTGAATTGTATCAGTGTTCCTGGTGGTG
CTCCAAGCAAGGTTTCAACTGATACAGTTCCATCAATTGAAAAGGATACTGCATACCAATATTTATGGAGCTGCAAAGACTACTTAGATAAGGTTTCCCGCATTATCTTG
GCCACTGATAGCGATGAACCGGGGCAAGCTTTGGCAGAAGAGCTAGCGCGTCGTCTTGGAAAACACAGATGTTGGCGAGTAGATTGGCCATATAAAGATGGCTTCAACCG
TTTTAAAGATGCCAATGAGGTTCTAGTGCACTTGGGACCAGATGCTTTGAAGAACGCAATTCAAGATGCCAAGTTTTATCAACTTTGAAGTTTAGATGAATTACAAAAAG
GTAGAGATCGTGGACCCGACACCTGACTTCGACTGCCTATCTGCTAGTAGTGTTTTCAGAGTACATAGTTAGTATGTGTCATTTTGAGTTTGTGTTTTGGCTTGTATATA
AAACAGGTTCATTTGTAATGTCAGTTGTGGGTTGTTCAAGTTTGTTGTTGGTAACTCTGATTTTAGTTTATTATGTATTTGTTTGTATCAGATTTATTGTGTTATATCTA
ATGTAAGTCTAGGCTGCATTGCATGTTTATATAACACTTGTTTTTGT

Protein sequence

Show/hide protein sequence

MPINSTFTFNSNFNFKFKFIHRSSPFSHPLNNFSVSSSPSRFLGFCTTRLSSAVSHAPPSPLPVKVLMKKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVI
PTGDFAMWRCFQFECGWAGRIFADGRLAFNGFSKTVKMVGRSSKESLVLEPLCDELISYFCKRMISQETLERNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQE
KGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVD
WPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL

PI0014379 (gene) of Melon (PI 482460) v1 genome