CuGenDBv2

Gene ID	PI0014430
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Genome location	chr03:18320026..18323227
RNA-Seq Expression	PI0014430
Synteny	PI0014430
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]

1.0e-65

82.89

Show/hide

Query:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ
        MTTLLTSFVQG PLKV KCGVC LVGHPNDKCP++I+DVN++RKYDP+GNTYNSGWRDNPNLRWGNDNQK TQA  +SSNQG NL+DI+KALATNTLSFQ
Subjt:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKK
        QEMKQQMTQLTTAISK++GK KLPAQPD+ANV+AISLRSGKIL+T +++EKK
Subjt:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]

3.8e-65

61.33

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Query:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ
        MTTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++I+DVN++RKYDPHGNTYNSGWRDNPNLRWGNDNQK TQA S+SSNQG NL+DI+KALATNTLSFQ
Subjt:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKKRKEISEKHLEIQASGDCIQFDAAQAKADEGPWPRTKTKIDEEDLPFPT
        QEMKQQMTQLTTAISK++GK KL AQ ++ANV+A+SLRSGKIL+T +++EKK    + K L +    +C      + K +  P P      + ++  FP 
Subjt:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKKRKEISEKHLEIQASGDCIQFDAAQAKADEGPWPRTKTKIDEEDLPFPT

Query:  ERYEEFPPRDEARPKRHSPYRRKSP
          +  + P+    P R +P ++++P
Subjt:  ERYEEFPPRDEARPKRHSPYRRKSP

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]

8.5e-65

78.26

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Query:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ
        MTTLLTSFVQG P KV KCGVCGLVGHPNDKC  +I+DVN++R+YDPH NTYNSGWRDNPNLRWGNDNQK TQA S+SSNQG NL+DI+KAL TNTLSFQ
Subjt:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKKRKEISEKHL
        QEMKQQMTQLTTAISK++GK KLPAQPD+ANV+AISLRSGKIL+T +++EKK++   E+ L
Subjt:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKKRKEISEKHL

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.1e-64

82.24

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Query:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ
        MTTLLTSFVQG P KV KCGVCGLVGHPNDKCP +I+DVN++R+YDPH NTYNSGWRDN NLRWGNDNQK TQA S+SSNQG NL+DI+KALATNTLSFQ
Subjt:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKK
        Q+MKQQMTQLTTAISK++GK KLPAQPDHANV+AISLRSGKIL+T +++EKK
Subjt:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKK

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.5e-64

80.26

Show/hide

Query:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ
        MTTLLTSFVQG P KV KCGVCGLVGHPNDKCP++I+D+N++R+YDPHGNTYN GWRD PNLRWGND Q  TQA S+SSNQG NL+DI+KAL TNTLSFQ
Subjt:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKK
        QEMKQQMTQLTTAISK++GK KLPAQPDHANV+AISLRSGKIL+T +++EKK
Subjt:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7V0Q7 Retrotransposon gag protein

4.1e-65

78.26

Show/hide

Query:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ
        MTTLLTSFVQG P KV KCGVCGLVGHPNDKC  +I+DVN++R+YDPH NTYNSGWRDNPNLRWGNDNQK TQA S+SSNQG NL+DI+KAL TNTLSFQ
Subjt:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKKRKEISEKHL
        QEMKQQMTQLTTAISK++GK KLPAQPD+ANV+AISLRSGKIL+T +++EKK++   E+ L
Subjt:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKKRKEISEKHL

A0A5D3CB46 Retrotransposon gag protein

5.4e-65

82.24

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Query:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ
        MTTLLTSFVQG P KV KCGVCGLVGHPNDKCP +I+DVN++R+YDPH NTYNSGWRDN NLRWGNDNQK TQA S+SSNQG NL+DI+KALATNTLSFQ
Subjt:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKK
        Q+MKQQMTQLTTAISK++GK KLPAQPDHANV+AISLRSGKIL+T +++EKK
Subjt:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKK

A0A5D3CFE7 Retrotransposon gag protein

7.1e-65

80.26

Show/hide

Query:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ
        MTTLLTSFVQG P KV KCGVCGLVGHPNDKCP++I+D+N++R+YDPHGNTYN GWRD PNLRWGND Q  TQA S+SSNQG NL+DI+KAL TNTLSFQ
Subjt:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKK
        QEMKQQMTQLTTAISK++GK KLPAQPDHANV+AISLRSGKIL+T +++EKK
Subjt:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKK

A0A5D3CRR8 Retrotransposon gag protein

1.9e-65

61.33

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Query:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ
        MTTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++I+DVN++RKYDPHGNTYNSGWRDNPNLRWGNDNQK TQA S+SSNQG NL+DI+KALATNTLSFQ
Subjt:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKKRKEISEKHLEIQASGDCIQFDAAQAKADEGPWPRTKTKIDEEDLPFPT
        QEMKQQMTQLTTAISK++GK KL AQ ++ANV+A+SLRSGKIL+T +++EKK    + K L +    +C      + K +  P P      + ++  FP 
Subjt:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKKRKEISEKHLEIQASGDCIQFDAAQAKADEGPWPRTKTKIDEEDLPFPT

Query:  ERYEEFPPRDEARPKRHSPYRRKSP
          +  + P+    P R +P ++++P
Subjt:  ERYEEFPPRDEARPKRHSPYRRKSP

E5GBZ4 Retrotransposon gag protein

4.9e-66

82.89

Show/hide

Query:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ
        MTTLLTSFVQG PLKV KCGVC LVGHPNDKCP++I+DVN++RKYDP+GNTYNSGWRDNPNLRWGNDNQK TQA  +SSNQG NL+DI+KALATNTLSFQ
Subjt:  MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKK
        QEMKQQMTQLTTAISK++GK KLPAQPD+ANV+AISLRSGKIL+T +++EKK
Subjt:  QEMKQQMTQLTTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACAACTCTTCTTACTTCTTTTGTGCAAGGAGACCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCCAATGATAAATGCCCCGACTTGATTAA
GGATGTTAATGTCATTCGTAAATACGACCCCCACGGTAATACATACAATTCGGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGCCCACCCAAG
CAACATCCTCCTCTTCAAACCAAGGTATAAATCTTAAAGACATAGTCAAAGCTTTAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTT
ACTACAGCCATAAGCAAGTTGGAAGGAAAAAGCAAGCTTCCGGCCCAACCGGACCATGCAAATGTGAATGCCATCTCACTAAGAAGTGGTAAGATTCTTGAAACCCTTTC
TAGTGAAGAAAAAAAGAGGAAAGAGATTTCGGAAAAACATTTGGAAATTCAAGCATCAGGAGATTGCATCCAATTTGATGCCGCCCAAGCAAAGGCTGACGAGGGGCCTT
GGCCAAGGACGAAAACAAAGATTGATGAAGAAGACCTACCTTTCCCCACGGAGCGGTACGAAGAGTTCCCACCACGAGACGAGGCTCGACCCAAGAGGCACAGCCCGTAT
AGAAGGAAATCCCCCAATTCTTTGGCCTTTTCGGAATCCAGGAAGGAGAGGAGTGGGACCCAGAGGAGCATAGTTGGCCTTGGCTCGGGGGCGGTTAGGAGTGTCCCCAC
TACTGGGTTAGGCGTCTGGTATTTAGTGCAGTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MTTLLTSFVQGDPLKVAKCGVCGLVGHPNDKCPDLIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGINLKDIVKALATNTLSFQQEMKQQMTQL
TTAISKLEGKSKLPAQPDHANVNAISLRSGKILETLSSEEKKRKEISEKHLEIQASGDCIQFDAAQAKADEGPWPRTKTKIDEEDLPFPTERYEEFPPRDEARPKRHSPY
RRKSPNSLAFSESRKERSGTQRSIVGLGSGAVRSVPTTGLGVWYLVQ

PI0014430 (gene) of Melon (PI 482460) v1 genome