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PI0014490 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0014490
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr06:12029999..12030253
RNA-Seq ExpressionPI0014490
SyntenyPI0014490
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035756.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-2878.31Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG
        MG GK+VEAN+AT +K+ + GSSSKT+VGPSQ+K KGKGKT K  KGKKVAKGKCYHCN+ GHWLRNCPKYL EKKAEKEAQG
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG

KAA0042102.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-2575.28Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPS----QMKNKGKGKTSKIGKGKKVA-KGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQGN
        MG GKQVEANVATTK+KF +GSSS TK GPS    Q+K KGK KT K  KGKK A KGKCYHC QNGHWLRNCPKYLVEKK EK+ QGN
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPS----QMKNKGKGKTSKIGKGKKVA-KGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQGN

KAA0045181.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-2674.7Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG
        MG GK+VEANVATT+K+ ++GSSSKT+VGPSQ+K K KGK  K  KGKKVAKGKCYHCN++ HWL+NC KYL EKKAEKEAQG
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG

TYK06687.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-2573.49Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG
        MG GK+VEAN+ATT+K+ + GS SKT+VGPS MK K KG+T K  KGKKV KGKCYHCN+NGHWLRNCPK L EKKAEK+AQG
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG

TYK29862.1 gag/pol protein [Cucumis melo var. makuwa]6.9e-2978.31Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG
        MG GK+VEAN+ATT+K+ + GSSSKT+VGPSQ+K KGKGKT K  KGKKVAKGKCYHCN++GHWLRNCP+YL EKKAEKEAQG
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG

TrEMBL top hitse value%identityAlignment
A0A5A7T0L9 Gag/pol protein7.5e-2978.31Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG
        MG GK+VEAN+AT +K+ + GSSSKT+VGPSQ+K KGKGKT K  KGKKVAKGKCYHCN+ GHWLRNCPKYL EKKAEKEAQG
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG

A0A5A7TF90 Gag/pol protein1.0e-2575.28Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPS----QMKNKGKGKTSKIGKGKKVA-KGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQGN
        MG GKQVEANVATTK+KF +GSSS TK GPS    Q+K KGK KT K  KGKK A KGKCYHC QNGHWLRNCPKYLVEKK EK+ QGN
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPS----QMKNKGKGKTSKIGKGKKVA-KGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQGN

A0A5A7TUI5 Gag/pol protein2.7e-2674.7Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG
        MG GK+VEANVATT+K+ ++GSSSKT+VGPSQ+K K KGK  K  KGKKVAKGKCYHCN++ HWL+NC KYL EKKAEKEAQG
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG

A0A5D3C4B0 Gag/pol protein5.9e-2673.49Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG
        MG GK+VEAN+ATT+K+ + GS SKT+VGPS MK K KG+T K  KGKKV KGKCYHCN+NGHWLRNCPK L EKKAEK+AQG
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG

A0A5D3E1U5 Gag/pol protein3.3e-2978.31Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG
        MG GK+VEAN+ATT+K+ + GSSSKT+VGPSQ+K KGKGKT K  KGKKVAKGKCYHCN++GHWLRNCP+YL EKKAEKEAQG
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTATGGGAAAGCAAGTGGAAGCAAATGTTGCTACCACTAAGAAAAAGTTTATAAAAGGATCGTCCTCTAAAACTAAAGTTGGGCCTTCACAAATGAAAAATAAGGG
AAAGGGGAAGACTTCCAAGATTGGTAAGGGAAAGAAAGTTGCGAAAGGTAAATGTTACCATTGCAACCAAAACGGGCATTGGTTAAGGAATTGCCCGAAGTACCTTGTTG
AGAAGAAAGCTGAGAAGGAAGCACAAGGAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTATGGGAAAGCAAGTGGAAGCAAATGTTGCTACCACTAAGAAAAAGTTTATAAAAGGATCGTCCTCTAAAACTAAAGTTGGGCCTTCACAAATGAAAAATAAGGG
AAAGGGGAAGACTTCCAAGATTGGTAAGGGAAAGAAAGTTGCGAAAGGTAAATGTTACCATTGCAACCAAAACGGGCATTGGTTAAGGAATTGCCCGAAGTACCTTGTTG
AGAAGAAAGCTGAGAAGGAAGCACAAGGAAACTAG
Protein sequenceShow/hide protein sequence
MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTSKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLVEKKAEKEAQGN