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PI0014527 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0014527
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerases I and III subunit RPAC2
Genome locationchr12:22221314..22223163
RNA-Seq ExpressionPI0014527
SyntenyPI0014527
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain
IPR033898 - DNA-directed RNA polymerases I and III subunit AC19
IPR036603 - RNA polymerase, RBP11-like subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652742.1 hypothetical protein Csa_014245 [Cucumis sativus]1.4e-5096.15Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD
        MEHGSFTDETKSTFS+ADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG PAREVLKDACQNLMVVCQHVRNTFDKAVLD+KLTNPV D
Subjt:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD

Query:  INIK
        INIK
Subjt:  INIK

KAG7036964.1 DNA-directed RNA polymerases I and III subunit RPAC2, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-4892.31Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD
        MEHGSFTDE+KSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG PAREVLKDACQNLM VCQHVRNT DKAVLD KLT PVGD
Subjt:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD

Query:  INIK
        INIK
Subjt:  INIK

XP_004147276.2 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus]1.4e-5096.15Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD
        MEHGSFTDETKSTFS+ADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG PAREVLKDACQNLMVVCQHVRNTFDKAVLD+KLTNPV D
Subjt:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD

Query:  INIK
        INIK
Subjt:  INIK

XP_023522054.1 DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp. pepo]9.7e-4993.27Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD
        MEHGSFTDETKSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG PAREVLKDACQNLM VCQHVRNT DKAVLD KLT PVGD
Subjt:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD

Query:  INIK
        INIK
Subjt:  INIK

XP_038893936.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]8.0e-5197.12Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD
        MEHGSFTDETKSTFSMADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG PAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLT PVGD
Subjt:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD

Query:  INIK
        INIK
Subjt:  INIK

TrEMBL top hitse value%identityAlignment
A0A0A0LUT5 RNA_pol_L_2 domain-containing protein6.6e-5196.15Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD
        MEHGSFTDETKSTFS+ADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG PAREVLKDACQNLMVVCQHVRNTFDKAVLD+KLTNPV D
Subjt:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD

Query:  INIK
        INIK
Subjt:  INIK

A0A0A0LV21 RNA_pol_L_2 domain-containing protein2.6e-4790.74Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLT----N
        MEHGSFTDETKSTFSMADEDHTLAN LR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG PAREVLKDACQNLMVVCQHVRNTFDKAVLD  LT     
Subjt:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLT----N

Query:  PVGDINIK
        PVGDINIK
Subjt:  PVGDINIK

A0A6J1D9Q8 DNA-directed RNA polymerases I and III subunit RPAC24.0e-4891.35Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD
        MEHGSF+DE+KSTFSMADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG  AREVLKD+CQNLMVVCQHVRNTFDK+VLD KLT PVGD
Subjt:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD

Query:  INIK
        INIK
Subjt:  INIK

A0A6J1G901 DNA-directed RNA polymerases I and III subunit RPAC21.4e-4892.31Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD
        MEHGSFTDE+KSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG PAREVLKDACQNLM VCQHVRNT DKAVLD KLT PVGD
Subjt:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD

Query:  INIK
        INIK
Subjt:  INIK

A0A6J1KDK3 DNA-directed RNA polymerases I and III subunit RPAC21.4e-4892.31Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD
        MEHGSFTDE+KSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG PAREVLKDACQNLM VCQHVRNT DKAVLD KLT PVGD
Subjt:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGD

Query:  INIK
        INIK
Subjt:  INIK

SwissProt top hitse value%identityAlignment
P0DPB6 DNA-directed RNA polymerases I and III subunit RPAC21.7e-1643.62Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGA-PAREVLKDACQNLMVVCQHVRNTFDKAVLDIK
        M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G  PA E  +     LM VCQHV + F+ ++ D K
Subjt:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGA-PAREVLKDACQNLMVVCQHVRNTFDKAVLDIK

P97304 DNA-directed RNA polymerases I and III subunit RPAC23.9e-1643.62Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGA-PAREVLKDACQNLMVVCQHVRNTFDKAVLDIK
        M   + TD    TF + +EDHTL N LRY + ++P V FCGY+  HPS++++N+R+QT GA PA E  +     L+ VCQHV   F+ ++ D K
Subjt:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGA-PAREVLKDACQNLMVVCQHVRNTFDKAVLDIK

Q1RMG8 DNA-directed RNA polymerases I and III subunit RPAC21.7e-1643.62Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGA-PAREVLKDACQNLMVVCQHVRNTFDKAVLDIK
        M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT GA PA E  +    +LM VCQHV + F+ ++ + K
Subjt:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGA-PAREVLKDACQNLMVVCQHVRNTFDKAVLDIK

Q5XK67 DNA-directed RNA polymerases I and III subunit RPAC23.5e-1747.13Show/hide
Query:  DETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK
        +E+  TF + +EDHTL N+LRY + ++P V FCGYSI HPS+ ++N R+QT  G PA E  +     L+ VCQHV NTF+ ++ + K
Subjt:  DETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK

Q6DRI4 DNA-directed RNA polymerases I and III subunit RPAC23.0e-1647.13Show/hide
Query:  DETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK
        DE   TF + +EDHTL N+LRY + +   V FCGYSI HPS++++N R+QT  G PA E L++   NL  VC+HV  TF+  + + K
Subjt:  DETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK

Arabidopsis top hitse value%identityAlignment
AT2G29540.1 RNApolymerase 14 kDa subunit1.3e-3064.52Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK
        MEHGSFT+ + ++F++++EDHTLAN +R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTG PAREV KDACQ LM + +HVR+ FDKAV + K
Subjt:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK

AT2G29540.2 RNApolymerase 14 kDa subunit1.3e-3064.52Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK
        MEHGSFT+ + ++F++++EDHTLAN +R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTG PAREV KDACQ LM + +HVR+ FDKAV + K
Subjt:  MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK

AT2G29540.3 RNApolymerase 14 kDa subunit4.7e-1767.8Show/hide
Query:  PRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK
        PRVT   Y+IPHPS  +VNIRVQTTG PAREV KDACQ LM + +HVR+ FDKAV + K
Subjt:  PRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like2.0e-0730Show/hide
Query:  SFTDETK----STFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG-APAREVLKDACQNLMVVCQHVRNTFDKAV
        S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R+ TT  +   +    A  +L     +++N F+  V
Subjt:  SFTDETK----STFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG-APAREVLKDACQNLMVVCQHVRNTFDKAV

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like5.4e-0536.36Show/hide
Query:  SFTDETK----STFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIR
        S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R
Subjt:  SFTDETK----STFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACATGGATCCTTCACAGACGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATACTCTCAGATACACTTTGAATCAAGATCCAAGAGT
GACATTCTGTGGATACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTCGAGTTCAAACAACAGGTGCTCCTGCAAGAGAGGTTTTGAAAGATGCTTGTCAGAACT
TGATGGTGGTGTGCCAACATGTGAGGAACACATTTGACAAAGCTGTGCTTGATATCAAACTCACCAACCCTGTGGGTGACATTAATATCAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAACATGGATCCTTCACAGACGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATACTCTCAGATACACTTTGAATCAAGATCCAAGAGT
GACATTCTGTGGATACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTCGAGTTCAAACAACAGGTGCTCCTGCAAGAGAGGTTTTGAAAGATGCTTGTCAGAACT
TGATGGTGGTGTGCCAACATGTGAGGAACACATTTGACAAAGCTGTGCTTGATATCAAACTCACCAACCCTGTGGGTGACATTAATATCAAATAG
Protein sequenceShow/hide protein sequence
MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGAPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTNPVGDINIK