CuGenDBv2

Gene ID	PI0014611
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Sigma factor binding protein 1
Genome location	chr10:22071589..22072498
RNA-Seq Expression	PI0014611
Synteny	PI0014611
Gene Ontology terms	GO:0006468 - protein phosphorylation (biological process) GO:0006952 - defense response (biological process) GO:0009738 - abscisic acid-activated signaling pathway (biological process) GO:0016567 - protein ubiquitination (biological process) GO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process) GO:0004672 - protein kinase activity (molecular function) GO:0004842 - ubiquitin-protein transferase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR008889 - VQ IPR039335 - Sigma factor binding protein 1/2

Homology

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GenBank top hits

e value

%identity

Alignment

BAI52954.1 sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris]

5.1e-45

73.29

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Query:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-VSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGA----
        MNVTGKKQAKRS+KSAA DFKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFME+  SAAS+ N QSSASA+F DYQL+G++D++V GKVE A    
Subjt:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-VSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGA----

Query:  -VAGVSPADDLAFLQNLDGNFAEMFNGFWHDS-TAQTEMPGVSALL
         VA + P DDLA L NLD +F  MF+GFW DS TAQ EMPG++ALL
Subjt:  -VAGVSPADDLAFLQNLDGNFAEMFNGFWHDS-TAQTEMPGVSALL

KAE8648870.1 hypothetical protein Csa_007950 [Cucumis sativus]

1.1e-50

82.09

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Query:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVS
        M VTGKKQAKRSKKSA   FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM S  S+GNG+  ASASF+D+Q+MGEEDVMVGGKVE  V GVS
Subjt:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVS

Query:  PADDLAFLQNLDGNFAEMFNGFWHD-STAQTEMP
        P D+LAFLQNLDGN+AEM NGFWHD STA++EMP
Subjt:  PADDLAFLQNLDGNFAEMFNGFWHD-STAQTEMP

XP_004142385.1 uncharacterized protein LOC101217123 [Cucumis sativus]

2.3e-53

82.14

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Query:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVS
        M VTGKKQAKRSKKSA   FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM S  S+GNG+  ASASF+D+Q+MGEEDVMVGGKVE  V GVS
Subjt:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVS

Query:  PADDLAFLQNLDGNFAEMFNGFWHD-STAQTEMPGVSALL
        P D+LAFLQNLDGN+AEM NGFWHD STA++EMPG+SALL
Subjt:  PADDLAFLQNLDGNFAEMFNGFWHD-STAQTEMPGVSALL

XP_016900221.1 PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo]

4.5e-57

87.86

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Query:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVS
        MNVTGKKQAKRSKKS A DFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM S AS+GNGQS ASASFLD QLMGEEDV+VGGK E A  GV+
Subjt:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVS

Query:  PADDLAFLQNLDGNFAEMFNGFWHD-STAQTEMPGVSALL
        PADDL FLQNLDGNFAEMFNGFWHD STAQTEM G+SALL
Subjt:  PADDLAFLQNLDGNFAEMFNGFWHD-STAQTEMPGVSALL

XP_038892750.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]

1.6e-46

75.34

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Query:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMV-SAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGA----
        MNVTGKK  KRSKKSAA +FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFME++ SAAS+ N QSSASA FLDYQL+G++D++V GKVE A    
Subjt:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMV-SAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGA----

Query:  -VAGVSPADDLAFLQNLDGNFAEMFNGFWHD-STAQTEMPGVSALL
         VA + P DDLA LQN D +FAEMF+GFW+D STAQT MPG+SALL
Subjt:  -VAGVSPADDLAFLQNLDGNFAEMFNGFWHD-STAQTEMPGVSALL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTR9 VQ domain-containing protein

1.1e-53

82.14

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Query:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVS
        M VTGKKQAKRSKKSA   FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM S  S+GNG+  ASASF+D+Q+MGEEDVMVGGKVE  V GVS
Subjt:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVS

Query:  PADDLAFLQNLDGNFAEMFNGFWHD-STAQTEMPGVSALL
        P D+LAFLQNLDGN+AEM NGFWHD STA++EMPG+SALL
Subjt:  PADDLAFLQNLDGNFAEMFNGFWHD-STAQTEMPGVSALL

A0A1S4DW56 sigma factor binding protein 1, chloroplastic-like

2.2e-57

87.86

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Query:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVS
        MNVTGKKQAKRSKKS A DFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM S AS+GNGQS ASASFLD QLMGEEDV+VGGK E A  GV+
Subjt:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVS

Query:  PADDLAFLQNLDGNFAEMFNGFWHD-STAQTEMPGVSALL
        PADDL FLQNLDGNFAEMFNGFWHD STAQTEM G+SALL
Subjt:  PADDLAFLQNLDGNFAEMFNGFWHD-STAQTEMPGVSALL

A0A5A7SVU6 Sigma factor binding protein 1

2.2e-57

87.86

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Query:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVS
        MNVTGKKQAKRSKKS A DFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM S AS+GNGQS ASASFLD QLMGEEDV+VGGK E A  GV+
Subjt:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVS

Query:  PADDLAFLQNLDGNFAEMFNGFWHD-STAQTEMPGVSALL
        PADDL FLQNLDGNFAEMFNGFWHD STAQTEM G+SALL
Subjt:  PADDLAFLQNLDGNFAEMFNGFWHD-STAQTEMPGVSALL

A0A6J1G190 sigma factor binding protein 1, chloroplastic-like

1.5e-34

62.09

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Query:  MNVTGKKQAK-RSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAAS---EGNGQSSASAS-FLDYQLMGEEDV------MVG
        M++T KKQ+K RS+KSAA DFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+++AA+     N QSS SAS FLDYQL+G++D+      +V 
Subjt:  MNVTGKKQAK-RSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAAS---EGNGQSSASAS-FLDYQLMGEEDV------MVG

Query:  GKVEGAV--AGVSPADDLAFLQNLDGNFAEMFNGFWHDSTA-QTEMPGVSALL
        GK+E A   + V+P +DL  ++N D +FAEMF  F HDS++ QTEMPG SALL
Subjt:  GKVEGAV--AGVSPADDLAFLQNLDGNFAEMFNGFWHDSTA-QTEMPGVSALL

D1MWZ4 Sigma factor binding protein 1

2.5e-45

73.29

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Query:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-VSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGA----
        MNVTGKKQAKRS+KSAA DFKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFME+  SAAS+ N QSSASA+F DYQL+G++D++V GKVE A    
Subjt:  MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-VSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGA----

Query:  -VAGVSPADDLAFLQNLDGNFAEMFNGFWHDS-TAQTEMPGVSALL
         VA + P DDLA L NLD +F  MF+GFW DS TAQ EMPG++ALL
Subjt:  -VAGVSPADDLAFLQNLDGNFAEMFNGFWHDS-TAQTEMPGVSALL

SwissProt top hits

e value

%identity

Alignment

Q9LDH1 Sigma factor binding protein 1, chloroplastic

2.7e-04

32.79

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Query:  KKQAKRSKKSAAGD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVSPAD
        +K  K+ KK+ + +   KV YIS+PM+V+T ASKFR LVQ+LTGQD+  +   E + + S  +   S  A  L  +++ +E     G+ +        A+
Subjt:  KKQAKRSKKSAAGD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVSPAD

Query:  DLAFLQNLDGNFAEMF-NGFWH
        D+     +   F+  F NGF++
Subjt:  DLAFLQNLDGNFAEMF-NGFWH

Arabidopsis top hits

e value

%identity

Alignment

AT2G41180.1 VQ motif-containing protein

1.6e-04

56.1

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Query:  KRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        KR   +     KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  KRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

AT3G56710.1 sigma factor binding protein 1

1.9e-05

32.79

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Query:  KKQAKRSKKSAAGD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVSPAD
        +K  K+ KK+ + +   KV YIS+PM+V+T ASKFR LVQ+LTGQD+  +   E + + S  +   S  A  L  +++ +E     G+ +        A+
Subjt:  KKQAKRSKKSAAGD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVSPAD

Query:  DLAFLQNLDGNFAEMF-NGFWH
        D+     +   F+  F NGF++
Subjt:  DLAFLQNLDGNFAEMF-NGFWH

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGCGGGGGATTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAA
GTTTCGATCTCTTGTGCAGAAACTCACGGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGTATCGGCTGCTAGTGAGGGGAATGGACAATCGTCGGCATCGGCGT
CGTTCCTTGACTACCAACTCATGGGTGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGGGGCGGTTGCGGGTGTGAGTCCGGCGGATGATTTGGCTTTTCTGCAGAAT
TTGGATGGGAATTTTGCAGAAATGTTCAATGGGTTTTGGCATGATTCCACGGCACAAACTGAGATGCCAGGTGTAAGTGCACTGCTGCTGTAG

mRNA sequence

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GAGATTACGGGCCCTATAAGGACATCTGGAAAGAAAGAACCTTCTATAACTTTTCCAATTTTCTCTTCGTTTCGTTTTCATTGGGAATTTTCCTTTTCCCTTAAAATTTC
CAACCCAACCGCTTTCCGGGAAACCGCAGCTTGTTTGCTTCCCAAGAAAATTTCTCCAATCCGTAATCCGTACATCCTTATATATAAATCCCACCACCACCATATCTTCC
ACTCCAAAATCACTCAAATTATAAAACCTCTAATTACCTCCATTGAAATTAAAAAGAAAAAAAAAAAAAAAAAAGAGGAGAAAATTCCCGATGAATGTAACAGGCAAAAA
ACAGGCAAAGAGAAGCAAGAAATCGGCGGCGGGGGATTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTGCAGA
AACTCACGGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGTATCGGCTGCTAGTGAGGGGAATGGACAATCGTCGGCATCGGCGTCGTTCCTTGACTACCAACTC
ATGGGTGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGGGGCGGTTGCGGGTGTGAGTCCGGCGGATGATTTGGCTTTTCTGCAGAATTTGGATGGGAATTTTGCAGA
AATGTTCAATGGGTTTTGGCATGATTCCACGGCACAAACTGAGATGCCAGGTGTAAGTGCACTGCTGCTGTAGTTTCGGAGTAGTTTATAATTTCTCTCATTTATTTATT
TATTTATTTTTTGTTTTAACTAAATAATGTGATGTGGATTTGTATAGATAGATGAAACCTTTCCCGGCCTTTTTCTTTGTCCACAATTATATTATTTTTAATATTTATAT
ATACCACAATTTTGAGAATTGTTTGGAATT

Protein sequence

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MNVTGKKQAKRSKKSAAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMVSAASEGNGQSSASASFLDYQLMGEEDVMVGGKVEGAVAGVSPADDLAFLQN
LDGNFAEMFNGFWHDSTAQTEMPGVSALLL

PI0014611 (gene) of Melon (PI 482460) v1 genome