CuGenDBv2

Gene ID	PI0014617
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ribonuclease H
Genome location	chr03:9833325..9833975
RNA-Seq Expression	PI0014617
Synteny	PI0014617
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036950.1 uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa]

1.0e-77

85.25

Show/hide

Query:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP
        MPIIAKD+EYKK VTDEE N FLK+VKQSEYKIIEQMH+TPARISLLSLFL+ EPHRK+LLDILNKA+VGHDISVEKF+ IIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN
        EGLGHTKALHIQ+KC+DYVIARVLVDNGSALNIMPKSTLL LPVDMSHIKSSTMVV+AFDGSRRE V+G I L      CI N
Subjt:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN

KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]

3.5e-78

85.79

Show/hide

Query:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP
        MPIIAKD+EYKK VTDEE N FLK+VKQSEYKIIEQMHHTPARISLLSLFL+ EPHRKVLLDILNKA+VGHDISVEKF+ IIGNIT  NSIVFTDDEIPP
Subjt:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN
        EGLGHTKALHIQVKC+DYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVV+ FDGSRRE V+G I L      CI N
Subjt:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN

KAA0046213.1 uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa]

2.3e-77

90.91

Show/hide

Query:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP
        MPIIAKD+EYK  VTDEE N FLK+VKQSEYKIIEQMHHTPARISLLSLFL+ EPHRKVLLDILNKA+VGHDISV+KF+ IIGNITSSNSIVFTDD+IPP
Subjt:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRRE
        EGLGHTKALHIQVKC+DYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVV+AFDGSRRE
Subjt:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRRE

KAA0067953.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]

5.1e-77

84.7

Show/hide

Query:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP
        MPIIAKD+EYKK VTDEE N FLK+VKQSEYKIIEQMHHTPARISLLSLFL+ EPHRKVLLDILNKA+VGHDIS+EKF+ IIGNITSSN IVFTDD+IPP
Subjt:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN
        EGLGHTKALHIQVKC+DYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVV+ F+GSRRE V+G I L      CI N
Subjt:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN

TYK21788.1 uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]

8.4e-80

87.43

Show/hide

Query:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP
        MPIIAKD+EYKK VTDEE N FLK+VKQSEYKIIEQMHHTPARISLLSLFL+ EPHRKVLLDILNKA+VGHDISVEKF+ IIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN
        EGLGHTKALHIQVKC+DYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVV+AFDGSRRE V+G I L      CI N
Subjt:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0R1 Uncharacterized protein

5.0e-78

85.25

Show/hide

Query:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP
        MPIIAKD+EYKK VTDEE N FLK+VKQSEYKIIEQMH+TPARISLLSLFL+ EPHRK+LLDILNKA+VGHDISVEKF+ IIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN
        EGLGHTKALHIQ+KC+DYVIARVLVDNGSALNIMPKSTLL LPVDMSHIKSSTMVV+AFDGSRRE V+G I L      CI N
Subjt:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN

A0A5A7T7R4 Ribonuclease H

1.7e-78

85.79

Show/hide

Query:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP
        MPIIAKD+EYKK VTDEE N FLK+VKQSEYKIIEQMHHTPARISLLSLFL+ EPHRKVLLDILNKA+VGHDISVEKF+ IIGNIT  NSIVFTDDEIPP
Subjt:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN
        EGLGHTKALHIQVKC+DYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVV+ FDGSRRE V+G I L      CI N
Subjt:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN

A0A5A7TRL7 Ribonuclease H

1.1e-77

90.91

Show/hide

Query:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP
        MPIIAKD+EYK  VTDEE N FLK+VKQSEYKIIEQMHHTPARISLLSLFL+ EPHRKVLLDILNKA+VGHDISV+KF+ IIGNITSSNSIVFTDD+IPP
Subjt:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRRE
        EGLGHTKALHIQVKC+DYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVV+AFDGSRRE
Subjt:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRRE

A0A5A7VIM6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein

2.5e-77

84.7

Show/hide

Query:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP
        MPIIAKD+EYKK VTDEE N FLK+VKQSEYKIIEQMHHTPARISLLSLFL+ EPHRKVLLDILNKA+VGHDIS+EKF+ IIGNITSSN IVFTDD+IPP
Subjt:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN
        EGLGHTKALHIQVKC+DYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVV+ F+GSRRE V+G I L      CI N
Subjt:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN

A0A5D3DEB3 Retrotrans_gag domain-containing protein

4.1e-80

87.43

Show/hide

Query:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP
        MPIIAKD+EYKK VTDEE N FLK+VKQSEYKIIEQMHHTPARISLLSLFL+ EPHRKVLLDILNKA+VGHDISVEKF+ IIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN
        EGLGHTKALHIQVKC+DYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVV+AFDGSRRE V+G I L      CI N
Subjt:  EGLGHTKALHIQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCCATCATAGCTAAGGATGTAGAATACAAAAAGCCTGTTACCGATGAGGAAACAAATGGATTCTTGAAATTAGTGAAACAAAGTGAATATAAGATCATAGAGCAAAT
GCATCATACTCCAGCTCGAATTTCTTTATTATCTTTGTTCTTGCATTTAGAGCCTCATCGCAAAGTGCTATTAGATATTTTGAACAAGGCATATGTGGGACATGACATTT
CAGTAGAAAAATTCAATGAAATTATTGGAAACATTACATCTTCAAATTCCATAGTCTTTACGGATGATGAAATTCCTCCTGAAGGTTTGGGTCATACAAAAGCACTGCAT
ATTCAAGTAAAGTGCAGAGACTACGTCATAGCAAGAGTTTTAGTGGATAATGGATCAGCTCTTAATATAATGCCTAAATCTACACTATTGAAGCTTCCAGTGGACATGTC
ACACATAAAATCAAGCACTATGGTTGTAAGAGCCTTTGATGGGTCACGTAGAGAAGACGTCCTTGGATTCATTCTGCTGGAGTGGTGCCATCCACATTGCATCAAAAATT
GA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MPIIAKDVEYKKPVTDEETNGFLKLVKQSEYKIIEQMHHTPARISLLSLFLHLEPHRKVLLDILNKAYVGHDISVEKFNEIIGNITSSNSIVFTDDEIPPEGLGHTKALH
IQVKCRDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVRAFDGSRREDVLGFILLEWCHPHCIKN

PI0014617 (gene) of Melon (PI 482460) v1 genome