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PI0014637 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0014637
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description50S ribosomal protein L23, chloroplastic
Genome locationchr10:10902909..10903764
RNA-Seq ExpressionPI0014637
SyntenyPI0014637
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001014 - Ribosomal protein L23/L25, conserved site
IPR005633 - Ribosomal protein L23/L25, N-terminal
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR013025 - Ribosomal protein L25/L23


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008460233.1 PREDICTED: 60S ribosomal protein L23a isoform X1 [Cucumis melo]3.6e-2552.94Show/hide
Query:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------
        MAPKADMTKKADPKAQALKTAKAVKS PTFKKKAKKIRTSVTFHRPKTLKKDRNPK                                            
Subjt:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------

Query:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                  PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII

XP_008463516.1 PREDICTED: 60S ribosomal protein L23a [Cucumis melo]5.2e-2451.63Show/hide
Query:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------
        MAPKAD TKKADPKAQALKTAKAVKS PTFKKKAKKIRTSVTFHRPKTLKK+RNPK                                            
Subjt:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------

Query:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                  PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII

XP_022154290.1 60S ribosomal protein L23a [Momordica charantia]2.4e-2452.29Show/hide
Query:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------
        MAPKAD TKKADPKAQALKTAKAVKS PTFKKKAKKIRTSVTFHRPKTLKKDRNPK                                            
Subjt:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------

Query:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                  PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII

XP_022939581.1 60S ribosomal protein L23a [Cucurbita moschata]2.4e-2451.63Show/hide
Query:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------
        MAPKAD+TKKADPKAQALKTAKAVKS PTFKKKAKKIRTSVTFHRPKTLKK+RNPK                                            
Subjt:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------

Query:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                  PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII

XP_022993268.1 60S ribosomal protein L23a-like [Cucurbita maxima]3.1e-2451.63Show/hide
Query:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------
        MAPKAD+TKKADPKAQALKTAKAVKS PTFKKKAKKIRTSVTFHRPKTLKK+RNPK                                            
Subjt:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------

Query:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                  PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII

TrEMBL top hitse value%identityAlignment
A0A1S3CBK7 50S ribosomal protein L23, chloroplastic1.8e-2552.94Show/hide
Query:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------
        MAPKADMTKKADPKAQALKTAKAVKS PTFKKKAKKIRTSVTFHRPKTLKKDRNPK                                            
Subjt:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------

Query:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                  PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII

A0A5A7SY40 50S ribosomal protein L23, chloroplastic1.8e-2552.94Show/hide
Query:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------
        MAPKADMTKKADPKAQALKTAKAVKS PTFKKKAKKIRTSVTFHRPKTLKKDRNPK                                            
Subjt:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------

Query:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                  PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII

A0A6J1DJ76 50S ribosomal protein L23, chloroplastic1.1e-2452.29Show/hide
Query:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------
        MAPKAD TKKADPKAQALKTAKAVKS PTFKKKAKKIRTSVTFHRPKTLKKDRNPK                                            
Subjt:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------

Query:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                  PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII

A0A6J1FGB6 50S ribosomal protein L23, chloroplastic1.1e-2451.63Show/hide
Query:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------
        MAPKAD+TKKADPKAQALKTAKAVKS PTFKKKAKKIRTSVTFHRPKTLKK+RNPK                                            
Subjt:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------

Query:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                  PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII

A0A6J1K1Q8 50S ribosomal protein L23, chloroplastic1.5e-2451.63Show/hide
Query:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------
        MAPKAD+TKKADPKAQALKTAKAVKS PTFKKKAKKIRTSVTFHRPKTLKK+RNPK                                            
Subjt:  MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK--------------------------------------------

Query:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                  PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  --------------------------PDGTKKAYIRLTPDYDALDVANKIGII

SwissProt top hitse value%identityAlignment
O22644 60S ribosomal protein L23A1.1e-1945.45Show/hide
Query:  MAPKADMTKKADPKAQALKTAKAVKSW-PTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------
        MAP A + KK D KAQALK AKAVKS   T +KKAKKIRTSVTFHRPKTLKKDRNPK                                           
Subjt:  MAPKADMTKKADPKAQALKTAKAVKSW-PTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------

Query:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                   PDGTKKAY+RLTPDYDALD+ANKIGII
Subjt:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII

Q07761 60S ribosomal protein L23a5.6e-2146.1Show/hide
Query:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------
        MAP KAD +KK+DPKAQA K AKAVKS  T KKK++KIRT VTFHRPKTLKKDRNPK                                           
Subjt:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------

Query:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                   PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII

Q8LD46 60S ribosomal protein L23a-13.4e-1844.16Show/hide
Query:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------
        M+P K D TKKADPKA+ALK AKAVKS   FKKK KKIRT VTFHRPKTL K R  K                                           
Subjt:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------

Query:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                   PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII

Q9AT35 60S ribosomal protein L23a1.1e-1945.45Show/hide
Query:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------
        M+P K D+TKK+D KAQALKTAKAVKS  T  KK KKIRTSVTFHRP+TL KDRNPK                                           
Subjt:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------

Query:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                   PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII

Q9M3C3 60S ribosomal protein L23a-21.0e-1743.51Show/hide
Query:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------
        M+P K D+TKKADPKA+ALK AKAVKS    KK AKKIRT VTFHRPKTL   R PK                                           
Subjt:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------

Query:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                   PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII

Arabidopsis top hitse value%identityAlignment
AT2G39460.1 ribosomal protein L23AA2.4e-1944.16Show/hide
Query:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------
        M+P K D TKKADPKA+ALK AKAVKS   FKKK KKIRT VTFHRPKTL K R  K                                           
Subjt:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------

Query:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                   PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII

AT2G39460.2 ribosomal protein L23AA2.4e-1944.16Show/hide
Query:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------
        M+P K D TKKADPKA+ALK AKAVKS   FKKK KKIRT VTFHRPKTL K R  K                                           
Subjt:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------

Query:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                   PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII

AT3G55280.1 ribosomal protein L23AB7.1e-1943.51Show/hide
Query:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------
        M+P K D+TKKADPKA+ALK AKAVKS    KK AKKIRT VTFHRPKTL   R PK                                           
Subjt:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------

Query:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                   PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII

AT3G55280.2 ribosomal protein L23AB7.1e-1943.51Show/hide
Query:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------
        M+P K D+TKKADPKA+ALK AKAVKS    KK AKKIRT VTFHRPKTL   R PK                                           
Subjt:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------

Query:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                   PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII

AT3G55280.3 ribosomal protein L23AB1.6e-1540.91Show/hide
Query:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------
        M+P K D+TKKADPKA+ALK AKAVKS         KIRT VTFHRPKTL   R PK                                           
Subjt:  MAP-KADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPK-------------------------------------------

Query:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII
                                   PDGTKKAY+RLTPDYDALDVANKIGII
Subjt:  ---------------------------PDGTKKAYIRLTPDYDALDVANKIGII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCTAAGGCTGATATGACCAAAAAGGCTGATCCAAAAGCTCAAGCTTTGAAGACTGCTAAGGCAGTCAAGTCTTGGCCAACTTTTAAGAAAAAGGCTAAGAAAAT
CAGAACATCGGTCACATTCCATCGCCCGAAGACATTGAAGAAGGATAGGAATCCCAAACCTGATGGAACAAAGAAGGCATACATTAGGTTAACCCCAGACTATGATGCTT
TGGACGTGGCAAATAAGATCGGAATTATTAAAACTTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCTAAGGCTGATATGACCAAAAAGGCTGATCCAAAAGCTCAAGCTTTGAAGACTGCTAAGGCAGTCAAGTCTTGGCCAACTTTTAAGAAAAAGGCTAAGAAAAT
CAGAACATCGGTCACATTCCATCGCCCGAAGACATTGAAGAAGGATAGGAATCCCAAACCTGATGGAACAAAGAAGGCATACATTAGGTTAACCCCAGACTATGATGCTT
TGGACGTGGCAAATAAGATCGGAATTATTAAAACTTCCTAG
Protein sequenceShow/hide protein sequence
MAPKADMTKKADPKAQALKTAKAVKSWPTFKKKAKKIRTSVTFHRPKTLKKDRNPKPDGTKKAYIRLTPDYDALDVANKIGIIKTS