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PI0014711 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0014711
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:27528663..27530157
RNA-Seq ExpressionPI0014711
SyntenyPI0014711
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]7.3e-4671.9Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+ NTYNSGWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEDKGKLPAQPDHAN
        T AISK++ KGKLPAQPD+AN
Subjt:  TNAISKLEDKGKLPAQPDHAN

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.3e-4671.9Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPH NTYNSGWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEDKGKLPAQPDHAN
        T  ISK++ KGKL AQPDHAN
Subjt:  TNAISKLEDKGKLPAQPDHAN

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.3e-4674.36Show/hide
Query:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI
        KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYNSGWRDN NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AI
Subjt:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI

Query:  SKLEDKGKLPAQPDHAN
        SK++ KGKLPAQPDHAN
Subjt:  SKLEDKGKLPAQPDHAN

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.3e-4671.9Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPH NTYN GWRD PNLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEDKGKLPAQPDHAN
        T AISK++ KGKLPAQPDHAN
Subjt:  TNAISKLEDKGKLPAQPDHAN

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]4.3e-4671.9Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPH NTYNSGWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEDKGKLPAQPDHAN
        T  ISK++ KGKL AQPDHAN
Subjt:  TNAISKLEDKGKLPAQPDHAN

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919102.1e-4671.9Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPH NTYNSGWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEDKGKLPAQPDHAN
        T  ISK++ KGKL AQPDHAN
Subjt:  TNAISKLEDKGKLPAQPDHAN

A0A5D3CB46 Retrotransposon gag protein1.6e-4674.36Show/hide
Query:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI
        KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYNSGWRDN NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AI
Subjt:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI

Query:  SKLEDKGKLPAQPDHAN
        SK++ KGKLPAQPDHAN
Subjt:  SKLEDKGKLPAQPDHAN

A0A5D3CFE7 Retrotransposon gag protein3.5e-4671.9Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPH NTYN GWRD PNLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEDKGKLPAQPDHAN
        T AISK++ KGKLPAQPDHAN
Subjt:  TNAISKLEDKGKLPAQPDHAN

A0A5D3DCG3 Retrotransposon gag protein2.1e-4671.9Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPH NTYNSGWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEDKGKLPAQPDHAN
        T  ISK++ KGKL AQPDHAN
Subjt:  TNAISKLEDKGKLPAQPDHAN

E5GBZ4 Retrotransposon gag protein3.5e-4671.9Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+ NTYNSGWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEDKGKLPAQPDHAN
        T AISK++ KGKLPAQPD+AN
Subjt:  TNAISKLEDKGKLPAQPDHAN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGCGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATAGAAACACTTACAATTCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACACCCAACGACCCGCACAAGCAACTT
CATCCTCGAACAATCAAGGTAGTAATTTGGAAGATTTAGTGAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAAT
GCAATAAGCAAACTAGAGGATAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGCGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATAGAAACACTTACAATTCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACACCCAACGACCCGCACAAGCAACTT
CATCCTCGAACAATCAAGGTAGTAATTTGGAAGATTTAGTGAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAAT
GCAATAAGCAAACTAGAGGATAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATTAG
Protein sequenceShow/hide protein sequence
MAPLPGSDGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHRNTYNSGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTN
AISKLEDKGKLPAQPDHAN