CuGenDBv2

Gene ID	PI0014719
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Pol protein
Genome location	chr05:9060271..9060582
RNA-Seq Expression	PI0014719
Synteny	PI0014719
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033514.1 pol protein [Cucumis melo var. makuwa]

1.6e-35

88.89

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Query:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPP
        MGPELVQSTNEAIQKIR+RM   QSRQKSYADVRRKDLEFEVGDKVFLKVAP++GVLRFE++EKLSPRFVGP EILERIGP+AYRLALPP
Subjt:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPP

KAA0040699.1 pol protein [Cucumis melo var. makuwa]

1.6e-35

88.89

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Query:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPP
        MGPELVQSTNEAIQKIR+RM   QSRQKSYADVRRKDLEFEVGDKVFLKVAP++GVLRFE++EKLSPRFVGP EILERIGP+AYRLALPP
Subjt:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPP

KAA0042189.1 pol protein [Cucumis melo var. makuwa]

3.6e-35

86.02

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Query:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPPHSL
        MGPELVQSTNEAIQKIR+RMQ  QSRQKSY DVRRKDLEF+VGDKVFLKVAP+KGVLRFE++ KLSPRFVGP EILERIGP+AYRLALPP  L
Subjt:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPPHSL

KAA0042366.1 pol protein [Cucumis melo var. makuwa]

3.6e-35

87.78

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Query:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPP
        MGPEL+QSTNEAIQKIR+RMQ  QSRQKSYADVRRKDLEF+VGDKVFLKVAP+KGVLRFE++ KLSPRFVGP EILERIGP+AYRLALPP
Subjt:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPP

KAA0052789.1 pol protein [Cucumis melo var. makuwa]

3.6e-35

86.02

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Query:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPPHSL
        MGPELVQSTNEAIQKIR+RMQ  QSRQKSY DVRRKDLEF+VGDKVFLKVAP+KGVLRFE++ KLSPRFVGP EILERIGP+AYRLALPP  L
Subjt:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPPHSL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SQQ3 Pol protein

7.7e-36

88.89

Show/hide

Query:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPP
        MGPELVQSTNEAIQKIR+RM   QSRQKSYADVRRKDLEFEVGDKVFLKVAP++GVLRFE++EKLSPRFVGP EILERIGP+AYRLALPP
Subjt:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPP

A0A5A7THF3 Reverse transcriptase

7.7e-36

88.89

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Query:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPP
        MGPELVQSTNEAIQKIR+RM   QSRQKSYADVRRKDLEFEVGDKVFLKVAP++GVLRFE++EKLSPRFVGP EILERIGP+AYRLALPP
Subjt:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPP

A0A5A7TK90 Reverse transcriptase

1.7e-35

87.78

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Query:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPP
        MGPEL+QSTNEAIQKIR+RMQ  QSRQKSYADVRRKDLEF+VGDKVFLKVAP+KGVLRFE++ KLSPRFVGP EILERIGP+AYRLALPP
Subjt:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPP

A0A5A7TLG9 Pol protein

1.7e-35

86.02

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Query:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPPHSL
        MGPELVQSTNEAIQKIR+RMQ  QSRQKSY DVRRKDLEF+VGDKVFLKVAP+KGVLRFE++ KLSPRFVGP EILERIGP+AYRLALPP  L
Subjt:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPPHSL

A0A5A7UGY4 Pol protein

1.7e-35

86.02

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Query:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPPHSL
        MGPELVQSTNEAIQKIR+RMQ  QSRQKSY DVRRKDLEF+VGDKVFLKVAP+KGVLRFE++ KLSPRFVGP EILERIGP+AYRLALPP  L
Subjt:  MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPPHSL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGTCCTGAGTTGGTTCAGTCTACTAATGAGGCTATACAGAAGATTAGAGCACGTATGCAAGCCGTGCAGAGTAGACAGAAAAGTTATGCTGATGTGAGACGGAAAGA
TCTTGAGTTTGAAGTGGGAGATAAAGTGTTCTTGAAAGTGGCACCTATAAAGGGTGTTCTGCGATTCGAGAAGAAGGAAAAGTTGAGTCCTCGTTTTGTTGGACCAGTTG
AGATTCTTGAGCGGATTGGCCCTATGGCGTACCGCTTGGCGTTGCCACCCCACTCTCTGTTGTTCATGATATCTTCCATGTTTCGATGTTGA

mRNA sequence

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Protein sequence

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MGPELVQSTNEAIQKIRARMQAVQSRQKSYADVRRKDLEFEVGDKVFLKVAPIKGVLRFEKKEKLSPRFVGPVEILERIGPMAYRLALPPHSLLFMISSMFRC

PI0014719 (gene) of Melon (PI 482460) v1 genome