; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0014732 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0014732
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr12:10205648..10206387
RNA-Seq ExpressionPI0014732
SyntenyPI0014732
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048760.1 pol polyprotein [Cucumis melo var. makuwa]4.4e-6166.15Show/hide
Query:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD
        M+S LN PFRF+GAHFK WK+KM FFLTL+K +A CTT+K  +P  +  KE+I S   WTE++FIC NLI NGLI++LYDYYS MS AKEVW+ALQKKY+
Subjt:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD

Query:  TEEAGFKKYVV---IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEEVNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPN
        TEEA  KKY V   ++ IID L S  KDF N+LRH TKE SL SLITRLRIEE+A KHDQ+EEVN IP K+ T V+K DLK K NKMKVQN+GPN
Subjt:  TEEAGFKKYVV---IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEEVNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPN

KAA0050409.1 hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa]7.8e-7464.34Show/hide
Query:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD
        MSSDLN PFRF+GAHFK WK+KMLFFLTL+KV  ACTTEKP+V + DP KEQ+K+LTTWTET+FICKNLILNGL ++LYDYYS M+TAK+VWEALQKKYD
Subjt:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD

Query:  TEEAGFKKYVV----------------------------------------IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEE
        TEEAG KKY V                                        + IIIDKL  LWKDF N+LRHKTKEFSLE+L TRLRIEEEA+KHD++EE
Subjt:  TEEAGFKKYVV----------------------------------------IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEE

Query:  VNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPNKQKNSKTPQSRS
        VNAIPRK+ TAV+KSDLKPKGNKMK   +G NKQ N   PQS S
Subjt:  VNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPNKQKNSKTPQSRS

KAA0059670.1 putative Polyprotein [Cucumis melo var. makuwa]1.4e-6769.08Show/hide
Query:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD
        MS +LN PFRFKGAHFK WK+KMLFFLTL+KV  ACT EKP+V + DP KEQ+ SL TWTET+FICKNLILNGL ++LYDYYS M+TAKEVW+ LQ KYD
Subjt:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD

Query:  TEEAGFKKYVVIAIIIDKL--PSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEEVNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPNKQKNSK
         EE G KKYVV   +  ++      +DF N+LRHKTKE SL+SLITRLRIEEEARKH+++EEVNAIPRK+ TAV+K DLKPKGNKMK   R  NKQ N  
Subjt:  TEEAGFKKYVVIAIIIDKL--PSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEEVNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPNKQKNSK

Query:  TPQSRST
         PQSRST
Subjt:  TPQSRST

KAA0065374.1 uncharacterized protein E6C27_scaffold17G00360 [Cucumis melo var. makuwa]1.2e-6659.66Show/hide
Query:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD
        MSSDLN PFRF+GAHFK WK+KMLFFLTL+KV  ACTTEK +V + DP++EQ+K+L TWTET+FICKNLILNGL ++LYDYYS M+T KEVW+ALQKKYD
Subjt:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD

Query:  TEEAGFKKYVV----------------------------------------IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEE
        T+EA  KKY V                                        +A+IIDKLP LWKDF N+LRHKTKEFSLESLITRL+IEEEARKHD++EE
Subjt:  TEEAGFKKYVV----------------------------------------IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEE

Query:  VNAIPRKQSTAVIKSDLKP--KGNKMKV-QNRGPNKQK
        VNAIPRK+ TAV+KSDL+   K ++ ++ Q + P  QK
Subjt:  VNAIPRKQSTAVIKSDLKP--KGNKMKV-QNRGPNKQK

TYJ98000.1 hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa]3.9e-7363.52Show/hide
Query:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD
        MSSDLN PFRF+GAHFK WK+KMLFFLTL+KV  ACT EKP+V + DP KEQ+K+LTTWTET+FICKNLILNGL ++LYDYYS M+TAK+VWEALQKKYD
Subjt:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD

Query:  TEEAGFKKYVV----------------------------------------IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEE
        TEEAG KKY V                                        + IIIDKLP LWKDF N+LRHKTKEFSLE+LITRL+IEEEA+K D+++E
Subjt:  TEEAGFKKYVV----------------------------------------IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEE

Query:  VNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPNKQKNSKTPQSRS
        VNAIPRK+ TAV+KSDLKPKGNKMK   +G NKQ N   PQS S
Subjt:  VNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPNKQKNSKTPQSRS

TrEMBL top hitse value%identityAlignment
A0A5A7U031 Pol polyprotein2.1e-6166.15Show/hide
Query:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD
        M+S LN PFRF+GAHFK WK+KM FFLTL+K +A CTT+K  +P  +  KE+I S   WTE++FIC NLI NGLI++LYDYYS MS AKEVW+ALQKKY+
Subjt:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD

Query:  TEEAGFKKYVV---IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEEVNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPN
        TEEA  KKY V   ++ IID L S  KDF N+LRH TKE SL SLITRLRIEE+A KHDQ+EEVN IP K+ T V+K DLK K NKMKVQN+GPN
Subjt:  TEEAGFKKYVV---IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEEVNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPN

A0A5A7UA92 Uncharacterized protein3.8e-7464.34Show/hide
Query:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD
        MSSDLN PFRF+GAHFK WK+KMLFFLTL+KV  ACTTEKP+V + DP KEQ+K+LTTWTET+FICKNLILNGL ++LYDYYS M+TAK+VWEALQKKYD
Subjt:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD

Query:  TEEAGFKKYVV----------------------------------------IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEE
        TEEAG KKY V                                        + IIIDKL  LWKDF N+LRHKTKEFSLE+L TRLRIEEEA+KHD++EE
Subjt:  TEEAGFKKYVV----------------------------------------IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEE

Query:  VNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPNKQKNSKTPQSRS
        VNAIPRK+ TAV+KSDLKPKGNKMK   +G NKQ N   PQS S
Subjt:  VNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPNKQKNSKTPQSRS

A0A5D3BDS3 Uncharacterized protein1.9e-7363.52Show/hide
Query:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD
        MSSDLN PFRF+GAHFK WK+KMLFFLTL+KV  ACT EKP+V + DP KEQ+K+LTTWTET+FICKNLILNGL ++LYDYYS M+TAK+VWEALQKKYD
Subjt:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD

Query:  TEEAGFKKYVV----------------------------------------IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEE
        TEEAG KKY V                                        + IIIDKLP LWKDF N+LRHKTKEFSLE+LITRL+IEEEA+K D+++E
Subjt:  TEEAGFKKYVV----------------------------------------IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEE

Query:  VNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPNKQKNSKTPQSRS
        VNAIPRK+ TAV+KSDLKPKGNKMK   +G NKQ N   PQS S
Subjt:  VNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPNKQKNSKTPQSRS

A0A5D3DC59 Reverse transcriptase Ty1/copia-type domain-containing protein5.8e-6759.66Show/hide
Query:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD
        MSSDLN PFRF+GAHFK WK+KMLFFLTL+KV  ACTTEK +V + DP++EQ+K+L TWTET+FICKNLILNGL ++LYDYYS M+T KEVW+ALQKKYD
Subjt:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD

Query:  TEEAGFKKYVV----------------------------------------IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEE
        T+EA  KKY V                                        +A+IIDKLP LWKDF N+LRHKTKEFSLESLITRL+IEEEARKHD++EE
Subjt:  TEEAGFKKYVV----------------------------------------IAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEE

Query:  VNAIPRKQSTAVIKSDLKP--KGNKMKV-QNRGPNKQK
        VNAIPRK+ TAV+KSDL+   K ++ ++ Q + P  QK
Subjt:  VNAIPRKQSTAVIKSDLKP--KGNKMKV-QNRGPNKQK

A0A5D3DRT2 Putative Polyprotein6.9e-6869.08Show/hide
Query:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD
        MS +LN PFRFKGAHFK WK+KMLFFLTL+KV  ACT EKP+V + DP KEQ+ SL TWTET+FICKNLILNGL ++LYDYYS M+TAKEVW+ LQ KYD
Subjt:  MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYD

Query:  TEEAGFKKYVVIAIIIDKL--PSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEEVNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPNKQKNSK
         EE G KKYVV   +  ++      +DF N+LRHKTKE SL+SLITRLRIEEEARKH+++EEVNAIPRK+ TAV+K DLKPKGNKMK   R  NKQ N  
Subjt:  TEEAGFKKYVVIAIIIDKL--PSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEEVNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPNKQKNSK

Query:  TPQSRST
         PQSRST
Subjt:  TPQSRST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCAGATCTCAATCACCCATTTCGTTTCAAAGGAGCACACTTCAAGTGTTGGAAGAAAAAGATGTTATTTTTCTTGACATTAAGAAAAGTAGTTGCAGCTTGTAC
CACTGAAAAACCAGAGGTCCCAAAATCTGATCCAATGAAGGAGCAGATTAAGAGTCTTACCACATGGACAGAGACAAATTTTATTTGTAAGAACTTAATTCTTAATGGAC
TTATTAATGATTTGTATGACTATTACAGCAATATGTCAACTGCAAAAGAGGTCTGGGAAGCGTTACAAAAGAAGTATGATACTGAGGAAGCCGGATTCAAGAAGTATGTG
GTAATTGCTATTATTATTGACAAGCTACCTTCATTGTGGAAGGATTTTAATAACAGTCTAAGGCACAAGACGAAGGAGTTCTCCCTAGAGAGTCTAATCACTCGGTTGAG
GATTGAGGAGGAGGCCAGAAAACATGATCAAGAGGAGGAAGTAAATGCCATTCCCAGGAAGCAGTCCACTGCTGTTATAAAGTCCGACCTGAAACCAAAAGGAAACAAAA
TGAAAGTTCAGAACAGAGGTCCCAACAAACAAAAGAATTCTAAAACACCTCAGTCCAGAAGTACGGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCAGATCTCAATCACCCATTTCGTTTCAAAGGAGCACACTTCAAGTGTTGGAAGAAAAAGATGTTATTTTTCTTGACATTAAGAAAAGTAGTTGCAGCTTGTAC
CACTGAAAAACCAGAGGTCCCAAAATCTGATCCAATGAAGGAGCAGATTAAGAGTCTTACCACATGGACAGAGACAAATTTTATTTGTAAGAACTTAATTCTTAATGGAC
TTATTAATGATTTGTATGACTATTACAGCAATATGTCAACTGCAAAAGAGGTCTGGGAAGCGTTACAAAAGAAGTATGATACTGAGGAAGCCGGATTCAAGAAGTATGTG
GTAATTGCTATTATTATTGACAAGCTACCTTCATTGTGGAAGGATTTTAATAACAGTCTAAGGCACAAGACGAAGGAGTTCTCCCTAGAGAGTCTAATCACTCGGTTGAG
GATTGAGGAGGAGGCCAGAAAACATGATCAAGAGGAGGAAGTAAATGCCATTCCCAGGAAGCAGTCCACTGCTGTTATAAAGTCCGACCTGAAACCAAAAGGAAACAAAA
TGAAAGTTCAGAACAGAGGTCCCAACAAACAAAAGAATTCTAAAACACCTCAGTCCAGAAGTACGGTATAA
Protein sequenceShow/hide protein sequence
MSSDLNHPFRFKGAHFKCWKKKMLFFLTLRKVVAACTTEKPEVPKSDPMKEQIKSLTTWTETNFICKNLILNGLINDLYDYYSNMSTAKEVWEALQKKYDTEEAGFKKYV
VIAIIIDKLPSLWKDFNNSLRHKTKEFSLESLITRLRIEEEARKHDQEEEVNAIPRKQSTAVIKSDLKPKGNKMKVQNRGPNKQKNSKTPQSRSTV