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PI0014754 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0014754
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr08:2371714..2371968
RNA-Seq ExpressionPI0014754
SyntenyPI0014754
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062295.1 hypothetical protein E6C27_scaffold154G00380 [Cucumis melo var. makuwa]2.7e-2571.08Show/hide
Query:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVK
        MCDASDV IGA+LGQK DKVI+PIY  SKT  + QENYTTTEKELLA++FAIE++ SYIVGS+ T+HSDH  IR+LM KKD +
Subjt:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVK

KAA0062414.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]3.2e-2672.62Show/hide
Query:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVKS
        MCDASDV +G + GQKKDKV  PIYY  KT  + +ENYTT EKELLAI+FAIE+FRSYIVGS+ T+HSDHS IR+LMAKKD KS
Subjt:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVKS

KAD4178046.1 hypothetical protein E3N88_26637 [Mikania micrantha]3.6e-2568.67Show/hide
Query:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVK
        MCDASD A+GA+LGQ++DK  HPIYY SKT  D QENYTTTEKELLA++FA ++FRSY+V S+ TV +DHS +RFL AKKD K
Subjt:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVK

TYK26567.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]3.2e-2672.62Show/hide
Query:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVKS
        MCDASDV +G + GQKKDKV  PIYY  KT  + +ENYTT EKELLAI+FAIE+FRSYIVGS+ T+HSDHS IR+LMAKKD KS
Subjt:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVKS

XP_024966379.1 uncharacterized protein K02A2.6-like [Cynara cardunculus var. scolymus]6.1e-2563.86Show/hide
Query:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVK
        MCDASD A+GA+LGQKK+ + HP+YYTSKTF D Q NYTTTEKELL ++FA E+FRSY++G++  VH+DH+ I++L++KKD K
Subjt:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVK

TrEMBL top hitse value%identityAlignment
A0A5A7V586 Retrovirus-related Pol polyprotein from transposon 17.61.6e-2672.62Show/hide
Query:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVKS
        MCDASDV +G + GQKKDKV  PIYY  KT  + +ENYTT EKELLAI+FAIE+FRSYIVGS+ T+HSDHS IR+LMAKKD KS
Subjt:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVKS

A0A5A7V8R9 RT_RNaseH domain-containing protein1.3e-2571.08Show/hide
Query:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVK
        MCDASDV IGA+LGQK DKVI+PIY  SKT  + QENYTTTEKELLA++FAIE++ SYIVGS+ T+HSDH  IR+LM KKD +
Subjt:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVK

A0A5D3DS34 Retrovirus-related Pol polyprotein from transposon 17.61.6e-2672.62Show/hide
Query:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVKS
        MCDASDV +G + GQKKDKV  PIYY  KT  + +ENYTT EKELLAI+FAIE+FRSYIVGS+ T+HSDHS IR+LMAKKD KS
Subjt:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVKS

A0A5N6MV81 Integrase catalytic domain-containing protein1.7e-2568.67Show/hide
Query:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVK
        MCDASD A+GA+LGQ++DK  HPIYY SKT  D QENYTTTEKELLA++FA ++FRSY+V S+ TV +DHS +RFL AKKD K
Subjt:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVK

A0A5N6NGG8 Integrase catalytic domain-containing protein3.8e-2568.67Show/hide
Query:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVK
        MCDASD AIGA+LGQ+++K  HPIYY SKT  D QENYTTTEKELLA++FA ++FRSY+V S+ TV +DHS +RFL AKKD K
Subjt:  MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVK

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.6e-1245.12Show/hide
Query:  DASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVKS
        DASDVA+GA+L Q      HP+ Y S+T  + + NY+T EKELLAI++A + FR Y++G    + SDH  + +L   KD  S
Subjt:  DASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVKS

P10394 Retrovirus-related Pol polyprotein from transposon 4121.1e-0843.42Show/hide
Query:  DASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMA
        DAS  A GA+L Q  +    P+ Y S+ FT  + N +TTE+EL AI +AI  FR YI G   TV +DH  + +L +
Subjt:  DASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMA

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.0e-0634.94Show/hide
Query:  DASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGS-EGTVHSDHSVIRFLMAKKDVKS
        DAS   IGA+L Q+      PI   S+T    ++NY T E+ELLAI++A+ + ++++ GS E  + +DH  + F +A ++  +
Subjt:  DASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGS-EGTVHSDHSVIRFLMAKKDVKS

P20825 Retrovirus-related Pol polyprotein from transposon 2978.8e-1143.04Show/hide
Query:  DASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKD
        DAS++A+GA+L Q      HPI + S+T  D + NY+  EKELLAI++A + FR Y++G +  + SDH  +R+L   K+
Subjt:  DASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKD

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.3e-0940.74Show/hide
Query:  DASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGT--VHSDHSVIRFLMAKKD
        DAS+ AIGA+L Q       PI Y S++    +ENY T EKE+LAII++++  R+Y+ G+ GT  V++DH  + F +  ++
Subjt:  DASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGT--VHSDHSVIRFLMAKKD

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGACGCAAGTGATGTGGCGATAGGGGCTATACTGGGTCAAAAGAAAGACAAAGTGATCCACCCAATATACTACACGAGCAAGACTTTCACTGATGTTCAAGAGAA
TTATACTACTACAGAGAAGGAATTACTCGCTATAATATTTGCGATTGAAGAGTTTAGGAGTTACATCGTTGGCTCAGAAGGTACGGTACACTCTGATCATTCTGTGATCA
GATTCCTCATGGCGAAGAAAGATGTCAAGTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGACGCAAGTGATGTGGCGATAGGGGCTATACTGGGTCAAAAGAAAGACAAAGTGATCCACCCAATATACTACACGAGCAAGACTTTCACTGATGTTCAAGAGAA
TTATACTACTACAGAGAAGGAATTACTCGCTATAATATTTGCGATTGAAGAGTTTAGGAGTTACATCGTTGGCTCAGAAGGTACGGTACACTCTGATCATTCTGTGATCA
GATTCCTCATGGCGAAGAAAGATGTCAAGTCGTAG
Protein sequenceShow/hide protein sequence
MCDASDVAIGAILGQKKDKVIHPIYYTSKTFTDVQENYTTTEKELLAIIFAIEEFRSYIVGSEGTVHSDHSVIRFLMAKKDVKS