CuGenDBv2

Gene ID	PI0014856
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr10:11901714..11902175
RNA-Seq Expression	PI0014856
Synteny	PI0014856
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

4.2e-56

66.67

Show/hide

Query:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW
        MPFGLTN P  FMDLMNR+FH+Y+DQFVIVFIDDIL+YS D+  H EHLRI+LQTLR+++L+AKFSKCEFWL+QVVFLGH++S++G+ VD QKVEA+ +W
Subjt:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW

Query:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF
        +RP   +EVR+FLGL GYYRRF+E FS+LA PL +L +K  +F+W+ +CE+SF
Subjt:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

4.2e-56

66.67

Show/hide

Query:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW
        MPFGLTN P  FMDLMNR+FH+Y+DQFVIVFIDDIL+YS D+  H EHLRI+LQTLR+++L+AKFSKCEFWL+QVVFLGH++S++G+ VD QKVEA+ +W
Subjt:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW

Query:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF
        +RP   +EVR+FLGL GYYRRF+E FS+LA PL +L +K  +F+W+ +CE+SF
Subjt:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

4.2e-56

66.67

Show/hide

Query:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW
        MPFGLTN P  FMDLMNR+FH+Y+DQFVIVFIDDIL+YS D+  H EHLRI+LQTLR+++L+AKFSKCEFWL+QVVFLGH++S++G+ VD QKVEA+ +W
Subjt:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW

Query:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF
        +RP   +EVR+FLGL GYYRRF+E FS+LA PL +L +K  +F+W+ +CE+SF
Subjt:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF

TYJ96975.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.9e-56

67.32

Show/hide

Query:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW
        MPFGLTN P  FMDLMNR+FHQY+DQFVIVFIDDIL+YS D+  H EHLRI+LQTLR ++L+AKFSKCEFWL+QVVFLGH++S++G+ VD QKVEA+ +W
Subjt:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW

Query:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF
        +RP   +EVR+FLGL GYYRRF+E FS+LA PL +L +K  +F+W+ +CE+SF
Subjt:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF

TYK25908.1 Retrotransposon protein [Cucumis melo var. makuwa]

4.2e-56

66.67

Show/hide

Query:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW
        MPFGLTN P  FMDLMNR+FH+Y+DQFVIVFIDDIL+YS D+  H EHLRI+LQTLR+++L+AKFSKCEFWL+QVVFLGH++S++G+ VD QKVEA+ +W
Subjt:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW

Query:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF
        +RP   +EVR+FLGL GYYRRF+E FS+LA PL +L +K  +F+W+ +CE+SF
Subjt:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1Y5 Reverse transcriptase

2.0e-56

66.67

Show/hide

Query:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW
        MPFGLTN P  FMDLMNR+FH+Y+DQFVIVFIDDIL+YS D+  H EHLRI+LQTLR+++L+AKFSKCEFWL+QVVFLGH++S++G+ VD QKVEA+ +W
Subjt:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW

Query:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF
        +RP   +EVR+FLGL GYYRRF+E FS+LA PL +L +K  +F+W+ +CE+SF
Subjt:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF

A0A5A7U2V7 Reverse transcriptase

2.0e-56

66.67

Show/hide

Query:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW
        MPFGLTN P  FMDLMNR+FH+Y+DQFVIVFIDDIL+YS D+  H EHLRI+LQTLR+++L+AKFSKCEFWL+QVVFLGH++S++G+ VD QKVEA+ +W
Subjt:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW

Query:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF
        +RP   +EVR+FLGL GYYRRF+E FS+LA PL +L +K  +F+W+ +CE+SF
Subjt:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF

A0A5D3BEU1 DNA/RNA polymerases superfamily protein

9.0e-57

67.32

Show/hide

Query:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW
        MPFGLTN P  FMDLMNR+FHQY+DQFVIVFIDDIL+YS D+  H EHLRI+LQTLR ++L+AKFSKCEFWL+QVVFLGH++S++G+ VD QKVEA+ +W
Subjt:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW

Query:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF
        +RP   +EVR+FLGL GYYRRF+E FS+LA PL +L +K  +F+W+ +CE+SF
Subjt:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF

A0A5D3BHI1 Reverse transcriptase

2.0e-56

66.67

Show/hide

Query:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW
        MPFGLTN P  FMDLMNR+FH+Y+DQFVIVFIDDIL+YS D+  H EHLRI+LQTLR+++L+AKFSKCEFWL+QVVFLGH++S++G+ VD QKVEA+ +W
Subjt:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW

Query:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF
        +RP   +EVR+FLGL GYYRRF+E FS+LA PL +L +K  +F+W+ +CE+SF
Subjt:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF

A0A5D3BS67 Reverse transcriptase

2.0e-56

66.67

Show/hide

Query:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW
        MPFGLTN P  FMDLMNR+FH+Y+DQFVIVFIDDIL+YS D+  H EHLRI+LQTLR+++L+AKFSKCEFWL+QVVFLGH++S++G+ VD QKVEA+ +W
Subjt:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW

Query:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF
        +RP   +EVR+FLGL GYYRRF+E FS+LA PL +L +K  +F+W+ +CE+SF
Subjt:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

2.3e-25

36.3

Show/hide

Query:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW
        MP+G++  P  F   +N +  +  +  V+ ++DDILI+S+ + +H +H++ +LQ L+   L    +KCEF   QV F+G+ IS +G     + ++ +  W
Subjt:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW

Query:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWT
        K+P+   E+R FLG V Y R+F+   S+L  PL +L+KK  R+KWT
Subjt:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWT

P0CT35 Transposon Tf2-2 polyprotein

2.3e-25

36.3

Show/hide

Query:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW
        MP+G++  P  F   +N +  +  +  V+ ++DDILI+S+ + +H +H++ +LQ L+   L    +KCEF   QV F+G+ IS +G     + ++ +  W
Subjt:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW

Query:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWT
        K+P+   E+R FLG V Y R+F+   S+L  PL +L+KK  R+KWT
Subjt:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWT

P0CT36 Transposon Tf2-3 polyprotein

2.3e-25

36.3

Show/hide

Query:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW
        MP+G++  P  F   +N +  +  +  V+ ++DDILI+S+ + +H +H++ +LQ L+   L    +KCEF   QV F+G+ IS +G     + ++ +  W
Subjt:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW

Query:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWT
        K+P+   E+R FLG V Y R+F+   S+L  PL +L+KK  R+KWT
Subjt:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWT

P0CT37 Transposon Tf2-4 polyprotein

2.3e-25

36.3

Show/hide

Query:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW
        MP+G++  P  F   +N +  +  +  V+ ++DDILI+S+ + +H +H++ +LQ L+   L    +KCEF   QV F+G+ IS +G     + ++ +  W
Subjt:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW

Query:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWT
        K+P+   E+R FLG V Y R+F+   S+L  PL +L+KK  R+KWT
Subjt:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWT

P0CT41 Transposon Tf2-12 polyprotein

2.3e-25

36.3

Show/hide

Query:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW
        MP+G++  P  F   +N +  +  +  V+ ++DDILI+S+ + +H +H++ +LQ L+   L    +KCEF   QV F+G+ IS +G     + ++ +  W
Subjt:  MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESW

Query:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWT
        K+P+   E+R FLG V Y R+F+   S+L  PL +L+KK  R+KWT
Subjt:  KRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWT

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

4.3e-19

42.59

Show/hide

Query:  HLRIILQTLRKERLFAKFSKCEFWLKQVVFLG--HIISSEGLKVDLQKVEAIESWKRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKW
        HL ++LQ   + + +A   KC F   Q+ +LG  HIIS EG+  D  K+EA+  W  P+  +E+R FLGL GYYRRFV+ + K+  PL  L+KK    KW
Subjt:  HLRIILQTLRKERLFAKFSKCEFWLKQVVFLG--HIISSEGLKVDLQKVEAIESWKRPRIVSEVRNFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKW

Query:  TRECERSF
        T     +F
Subjt:  TRECERSF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCTTTTGGATTGACCAATGGCCCAACCGCCTTCATGGACTTAATGAATAGAGTGTTCCATCAATACATGGATCAATTTGTCATTGTCTTTATTGATGACATTCTGAT
TTATTCACAAGACAAGGTACAACATGCGGAACATTTAAGGATCATCTTACAAACTCTGCGGAAAGAGAGACTATTCGCAAAGTTTAGTAAGTGTGAATTCTGGTTGAAGC
AAGTAGTGTTCCTTGGGCACATTATATCCTCAGAAGGACTGAAAGTTGATTTGCAAAAGGTGGAGGCGATTGAAAGTTGGAAACGTCCTAGAATAGTTTCTGAAGTTCGA
AACTTTCTTGGTTTGGTGGGTTACTATAGACGTTTTGTGGAAGGATTCTCCAAGCTCGCCTTTCCTTTGAGATCGCTCATGAAGAAGGTGACGAGATTCAAGTGGACGCG
CGAATGCGAAAGGAGTTTCTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MPFGLTNGPTAFMDLMNRVFHQYMDQFVIVFIDDILIYSQDKVQHAEHLRIILQTLRKERLFAKFSKCEFWLKQVVFLGHIISSEGLKVDLQKVEAIESWKRPRIVSEVR
NFLGLVGYYRRFVEGFSKLAFPLRSLMKKVTRFKWTRECERSF

PI0014856 (gene) of Melon (PI 482460) v1 genome