CuGenDBv2

Gene ID	PI0014868
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr05:14562897..14564621
RNA-Seq Expression	PI0014868
Synteny	PI0014868
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032766.1 retrotransposon protein [Cucumis melo var. makuwa]

2.2e-39

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Query:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT
        G NDE KCI+ EKEL+DNWV+SHP A GLLNKPFP+YD+L YVFGRDRATG  AETFA+VGSN P  GYD F + DGN+ +FP +YSQG+D+S +D+  +
Subjt:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT

Query:  RPSRASEGRAGSSGLKRKRG
        RPSRASEGR GSSG KRKRG
Subjt:  RPSRASEGRAGSSGLKRKRG

KAA0042500.1 retrotransposon protein [Cucumis melo var. makuwa]

4.5e-40

70.83

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Query:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT
        G NDE KCI+VEKEL+DNWV+SHP A GLLNKPFP+YD+L YVFGRDRATG  AETFA+VGSN P  GYD F + DGN+ +FP +YSQG+D+S +D+  +
Subjt:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT

Query:  RPSRASEGRAGSSGLKRKRG
        RPSRASEGR GSSG KRKRG
Subjt:  RPSRASEGRAGSSGLKRKRG

KAA0050293.1 retrotransposon protein [Cucumis melo var. makuwa]

1.3e-39

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Query:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVPA-GYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT
        G NDE KCI+ EKEL+DNWV+SHP A GLLNKPFP+YD+L YVFGRDRATG  AETFA+VGSN P  GYD F + DGN+ +FP++YSQG+D+S +D+  +
Subjt:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVPA-GYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT

Query:  RPSRASEGRAGSSGLKRKRG
        RPSRASEGR GSSG KRKRG
Subjt:  RPSRASEGRAGSSGLKRKRG

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]

1.7e-39

70.83

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Query:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT
        G NDE KCII EKEL+DNWV+SHP A GLLNKPFP+YD+L YVFGRDRATG  AETFA+VGSN P  GYD F + DGN+ +FP +YSQG+D+S +D+  +
Subjt:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT

Query:  RPSRASEGRAGSSGLKRKRG
        RPSRASEGR GSSG KRKRG
Subjt:  RPSRASEGRAGSSGLKRKRG

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]

2.2e-39

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Query:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT
        G NDE KCI+ EKEL+DNWV+SHP A GLLNKPFP+YD+L YVFGRDRATG  AETFA+VGSN P  GYD F + DGN+ +FP +YSQG+D+S +D+  +
Subjt:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT

Query:  RPSRASEGRAGSSGLKRKRG
        RPSRASEGR GSSG KRKRG
Subjt:  RPSRASEGRAGSSGLKRKRG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TGP1 Retrotransposon protein

2.2e-40

70.83

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Query:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT
        G NDE KCI+VEKEL+DNWV+SHP A GLLNKPFP+YD+L YVFGRDRATG  AETFA+VGSN P  GYD F + DGN+ +FP +YSQG+D+S +D+  +
Subjt:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT

Query:  RPSRASEGRAGSSGLKRKRG
        RPSRASEGR GSSG KRKRG
Subjt:  RPSRASEGRAGSSGLKRKRG

A0A5A7TRV1 Retrotransposon protein

1.1e-39

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Query:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT
        G NDE KCI+ EKEL+DNWV+SHP A GLLNKPFP+YD+L YVFGRDRATG  AETFA+VGSN P  GYD F + DGN+ +FP +YSQG+D+S +D+  +
Subjt:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT

Query:  RPSRASEGRAGSSGLKRKRG
        RPSRASEGR GSSG KRKRG
Subjt:  RPSRASEGRAGSSGLKRKRG

A0A5A7U308 Retrotransposon protein

6.3e-40

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Query:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVPA-GYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT
        G NDE KCI+ EKEL+DNWV+SHP A GLLNKPFP+YD+L YVFGRDRATG  AETFA+VGSN P  GYD F + DGN+ +FP++YSQG+D+S +D+  +
Subjt:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVPA-GYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT

Query:  RPSRASEGRAGSSGLKRKRG
        RPSRASEGR GSSG KRKRG
Subjt:  RPSRASEGRAGSSGLKRKRG

A0A5A7VES2 Retrotransposon protein

8.3e-40

70.83

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Query:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT
        G NDE KCII EKEL+DNWV+SHP A GLLNKPFP+YD+L YVFGRDRATG  AETFA+VGSN P  GYD F + DGN+ +FP +YSQG+D+S +D+  +
Subjt:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT

Query:  RPSRASEGRAGSSGLKRKRG
        RPSRASEGR GSSG KRKRG
Subjt:  RPSRASEGRAGSSGLKRKRG

A0A5D3DCZ1 Retrotransposon protein

1.1e-39

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Query:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT
        G NDE KCI+ EKEL+DNWV+SHP A GLLNKPFP+YD+L YVFGRDRATG  AETFA+VGSN P  GYD F + DGN+ +FP +YSQG+D+S +D+  +
Subjt:  GSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVP-AGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGT

Query:  RPSRASEGRAGSSGLKRKRG
        RPSRASEGR GSSG KRKRG
Subjt:  RPSRASEGRAGSSGLKRKRG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.2 unknown protein

7.2e-04

26.76

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Query:  IIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGH---AETF-----ANVGSNVPAGYDGF
        +I + ++++ ++++HP A     K  P Y +LC++FG++ + G +   A+ F       V  N     DGF
Subjt:  IIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGH---AETF-----ANVGSNVPAGYDGF

Sequences

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CDS sequence

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ATGGAGGTGGTTCGAGTGGGTTCGAATGATGAGCTGAAATGTATTATTGTCGAGAAAGAGTTGTACGACAATTGGGTGAAGAGTCATCCAGTCGCAAATGGCCTCTTAAA
TAAACCCTTTCCCCATTATGACGACCTCTGCTACGTCTTTGGAAGAGATCGTGCGACAGGAGGTCATGCTGAAACTTTTGCCAATGTTGGGTCGAACGTGCCTGCAGGGT
ACGATGGATTTCCCGTTTATGATGGGAATGATGTGGAGTTCCCCATGATGTACAGTCAGGGACTAGACATGTCACCTAACGACATAATGGGCACACGACCCAGTCGGGCG
TCTGAGGGTAGGGCGGGTTCCAGCGGTTTGAAGAGGAAACGGGGAGGGTAG

mRNA sequence

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Protein sequence

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MEVVRVGSNDELKCIIVEKELYDNWVKSHPVANGLLNKPFPHYDDLCYVFGRDRATGGHAETFANVGSNVPAGYDGFPVYDGNDVEFPMMYSQGLDMSPNDIMGTRPSRA
SEGRAGSSGLKRKRGG

PI0014868 (gene) of Melon (PI 482460) v1 genome