; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0014881 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0014881
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:10493086..10494537
RNA-Seq ExpressionPI0014881
SyntenyPI0014881
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]6.2e-6269.06Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN GWRD+PNLRWGNDNQ+ +QA   S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSK
         EMKQQM+ LT AISK+ GKGKLPAQPD+ANVS ISL SGK L+T ++ E+KVTS  + L +K+E KEEK+ET    S+SK
Subjt:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.0e-6264.95Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN GWRD+PNLRWGNDNQ+ +QA S S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSKELHDEFDELPINN
         EMKQQM+ LT AISK+ GKGKL AQ ++ANVS +SL SGK L+T ++ E+K TS P+ L  K+E KEEK+ET     +SK      D+ P+N+
Subjt:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSKELHDEFDELPINN

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.3e-6366.84Show/hide
Query:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQN
        TTLLTSFVQG  +KV KCGVCGLVGH N+KCP+++E+ N++R+YDPHSNTYN GWRD+PNLRWGNDNQ+ +QA S S+NQGTNLED++KALATNT+SFQ 
Subjt:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQN

Query:  EMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSKELHDEFDELPINN
        EMKQQM+ LT AISK+ GKGKLPAQ DHANVS ISL SGK L+T ++ E+KVTS P+ L +K+E KEEK+ET    S+SK      D+ P+N+
Subjt:  EMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSKELHDEFDELPINN

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.7e-6270.11Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN GWRD+ NLRWGNDNQ+ +QA S S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETR
         +MKQQM+ LT AISK+ GKGKLPAQPDHANVS ISL SGK L+T ++ E+K+TS P+ L +K+E KEEK++++
Subjt:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETR

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]9.5e-6364.95Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN+GWRD+PNLRWGNDNQ+ +QA   S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSKELHDEFDELPINN
         +MKQQM+ LT  ISK+ GKGKLPAQPDH NVS ISL SGK L+T ++ E+KVTS  + L +K++ KEEK+ET S  S+SK      D+ P+N+
Subjt:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSKELHDEFDELPINN

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032914.6e-6364.95Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN+GWRD+PNLRWGNDNQ+ +QA   S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSKELHDEFDELPINN
         +MKQQM+ LT  ISK+ GKGKLPAQPDH NVS ISL SGK L+T ++ E+KVTS  + L +K++ KEEK+ET S  S+SK      D+ P+N+
Subjt:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSKELHDEFDELPINN

A0A5A7VQ60 Retrotransposon gag protein2.1e-6366.84Show/hide
Query:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQN
        TTLLTSFVQG  +KV KCGVCGLVGH N+KCP+++E+ N++R+YDPHSNTYN GWRD+PNLRWGNDNQ+ +QA S S+NQGTNLED++KALATNT+SFQ 
Subjt:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQN

Query:  EMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSKELHDEFDELPINN
        EMKQQM+ LT AISK+ GKGKLPAQ DHANVS ISL SGK L+T ++ E+KVTS P+ L +K+E KEEK+ET    S+SK      D+ P+N+
Subjt:  EMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSKELHDEFDELPINN

A0A5D3CB46 Retrotransposon gag protein2.3e-6270.11Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN GWRD+ NLRWGNDNQ+ +QA S S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETR
         +MKQQM+ LT AISK+ GKGKLPAQPDHANVS ISL SGK L+T ++ E+K+TS P+ L +K+E KEEK++++
Subjt:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETR

A0A5D3CRR8 Retrotransposon gag protein3.9e-6264.95Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN GWRD+PNLRWGNDNQ+ +QA S S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSKELHDEFDELPINN
         EMKQQM+ LT AISK+ GKGKL AQ ++ANVS +SL SGK L+T ++ E+K TS P+ L  K+E KEEK+ET     +SK      D+ P+N+
Subjt:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSKELHDEFDELPINN

E5GBZ4 Retrotransposon gag protein3.0e-6269.06Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN GWRD+PNLRWGNDNQ+ +QA   S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSK
         EMKQQM+ LT AISK+ GKGKLPAQPD+ANVS ISL SGK L+T ++ E+KVTS  + L +K+E KEEK+ET    S+SK
Subjt:  NEMKQQMSHLTNAISKLKGKGKLPAQPDHANVSVISLISGKTLET-SSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGCCCTGACTTAGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGTCGGTTGGAGAGACAGCCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAG
CAACCTCCTGTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACTATCTCTTTTCAGAATGAAATGAAACAACAGATGTCTCATCTA
ACAAATGCCATAAGCAAATTAAAGGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGTCATCTCGCTTATAAGTGGTAAGACTCTGGAAACCTCTTC
AAGTGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGATCTTTACTATCTTCTTCAAAAGAATTGCATG
ATGAATTTGATGAATTGCCTATTAATAATGAATTTGCTAAACAAGAATTAGATGAAATTGATGATGAGCTTTGTTTGCAAGAGTTTGATGATGAAAAAGAGATGGTAGAA
GTAGAAATGGATGAAAAATTAAATCTTGATGGAATAAACTCTAACACTTTTTCCTTTTCTCCCCAGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGCCCTGACTTAGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGTCGGTTGGAGAGACAGCCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAG
CAACCTCCTGTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACTATCTCTTTTCAGAATGAAATGAAACAACAGATGTCTCATCTA
ACAAATGCCATAAGCAAATTAAAGGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGTCATCTCGCTTATAAGTGGTAAGACTCTGGAAACCTCTTC
AAGTGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGATCTTTACTATCTTCTTCAAAAGAATTGCATG
ATGAATTTGATGAATTGCCTATTAATAATGAATTTGCTAAACAAGAATTAGATGAAATTGATGATGAGCTTTGTTTGCAAGAGTTTGATGATGAAAAAGAGATGGTAGAA
GTAGAAATGGATGAAAAATTAAATCTTGATGGAATAAACTCTAACACTTTTTCCTTTTCTCCCCAGGAATAA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDSPNLRWGNDNQRPSQATSCSNNQGTNLEDLVKALATNTISFQNEMKQQMSHL
TNAISKLKGKGKLPAQPDHANVSVISLISGKTLETSSSEEKVTSTPILLENKDEKKEEKLETRSLLSSSKELHDEFDELPINNEFAKQELDEIDDELCLQEFDDEKEMVE
VEMDEKLNLDGINSNTFSFSPQE