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PI0014889 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0014889
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:8460475..8460864
RNA-Seq ExpressionPI0014889
SyntenyPI0014889
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051981.1 hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa]1.3e-2347.66Show/hide
Query:  SSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH----LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATKRIIISNMVQPRG
        SSS ICCS++   L+Y+  E+VV+ DMLQPR+ SS I  +RE P     L+Y A E+I++SN++QPR SSS I CS+++  L+Y   +++++S ++QPR 
Subjt:  SSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH----LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATKRIIISNMVQPRG

Query:  SSSPIWCNREDHNLHYGATERIIIFNMV
        SSS I C RE   L Y ATE+II+   V
Subjt:  SSSPIWCNREDHNLHYGATERIIIFNMV

KAA0063700.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.0e-2446.43Show/hide
Query:  MQLRVSSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH-----------LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATK
        +Q + SSS + CSRECR L+YVA+E VV+  MLQ R+ SS I C RE              L+Y A E+I++SN++Q R SSS I CS+++  L+Y   K
Subjt:  MQLRVSSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH-----------LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATK

Query:  RIIISNMVQPRGSSSPIWCNREDHNLHYGATERIIIFNMV
         +I+S M+QPR SSS I CNRE   L Y A + ++I NM+
Subjt:  RIIISNMVQPRGSSSPIWCNREDHNLHYGATERIIIFNMV

KAA0066592.1 hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa]6.7e-2348.41Show/hide
Query:  RVSSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPHLQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATKRIIISNMVQPRGSS
        R SSS IC  +E RHL+YVA+E VV+ +MLQ R  S  I CSRE   L+Y   E+I++SN++Q R SSS I CS+E   L+Y A +++I+SNM+Q R SS
Subjt:  RVSSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPHLQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATKRIIISNMVQPRGSS

Query:  SPIWCNREDHNLHYGATERIIIFNMV
        S I C++E   L Y   E+ ++ NM+
Subjt:  SPIWCNREDHNLHYGATERIIIFNMV

TYK04576.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-2347.66Show/hide
Query:  SSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH----LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATKRIIISNMVQPRG
        SSS ICCS++   L+Y+  E+VV+ DMLQPR+ SS I  +RE P     L+Y A E+I++SN++QPR SSS I CS+++  L+Y   +++++S ++QPR 
Subjt:  SSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH----LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATKRIIISNMVQPRG

Query:  SSSPIWCNREDHNLHYGATERIIIFNMV
        SSS I C RE   L Y ATE+II+   V
Subjt:  SSSPIWCNREDHNLHYGATERIIIFNMV

TYK27123.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.0e-2446.43Show/hide
Query:  MQLRVSSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH-----------LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATK
        +Q + SSS + CSRECR L+YVA+E VV+  MLQ R+ SS I C RE              L+Y A E+I++SN++Q R SSS I CS+++  L+Y   K
Subjt:  MQLRVSSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH-----------LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATK

Query:  RIIISNMVQPRGSSSPIWCNREDHNLHYGATERIIIFNMV
         +I+S M+QPR SSS I CNRE   L Y A + ++I NM+
Subjt:  RIIISNMVQPRGSSSPIWCNREDHNLHYGATERIIIFNMV

TrEMBL top hitse value%identityAlignment
A0A5A7UEK9 Uncharacterized protein6.5e-2447.66Show/hide
Query:  SSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH----LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATKRIIISNMVQPRG
        SSS ICCS++   L+Y+  E+VV+ DMLQPR+ SS I  +RE P     L+Y A E+I++SN++QPR SSS I CS+++  L+Y   +++++S ++QPR 
Subjt:  SSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH----LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATKRIIISNMVQPRG

Query:  SSSPIWCNREDHNLHYGATERIIIFNMV
        SSS I C RE   L Y ATE+II+   V
Subjt:  SSSPIWCNREDHNLHYGATERIIIFNMV

A0A5A7V935 Ty3-gypsy retrotransposon protein2.9e-2446.43Show/hide
Query:  MQLRVSSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH-----------LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATK
        +Q + SSS + CSRECR L+YVA+E VV+  MLQ R+ SS I C RE              L+Y A E+I++SN++Q R SSS I CS+++  L+Y   K
Subjt:  MQLRVSSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH-----------LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATK

Query:  RIIISNMVQPRGSSSPIWCNREDHNLHYGATERIIIFNMV
         +I+S M+QPR SSS I CNRE   L Y A + ++I NM+
Subjt:  RIIISNMVQPRGSSSPIWCNREDHNLHYGATERIIIFNMV

A0A5A7VE10 Uncharacterized protein3.2e-2348.41Show/hide
Query:  RVSSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPHLQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATKRIIISNMVQPRGSS
        R SSS IC  +E RHL+YVA+E VV+ +MLQ R  S  I CSRE   L+Y   E+I++SN++Q R SSS I CS+E   L+Y A +++I+SNM+Q R SS
Subjt:  RVSSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPHLQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATKRIIISNMVQPRGSS

Query:  SPIWCNREDHNLHYGATERIIIFNMV
        S I C++E   L Y   E+ ++ NM+
Subjt:  SPIWCNREDHNLHYGATERIIIFNMV

A0A5D3C2C8 Retrotransposon gag protein6.5e-2447.66Show/hide
Query:  SSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH----LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATKRIIISNMVQPRG
        SSS ICCS++   L+Y+  E+VV+ DMLQPR+ SS I  +RE P     L+Y A E+I++SN++QPR SSS I CS+++  L+Y   +++++S ++QPR 
Subjt:  SSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH----LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATKRIIISNMVQPRG

Query:  SSSPIWCNREDHNLHYGATERIIIFNMV
        SSS I C RE   L Y ATE+II+   V
Subjt:  SSSPIWCNREDHNLHYGATERIIIFNMV

A0A5D3DU03 Ty3-gypsy retrotransposon protein2.9e-2446.43Show/hide
Query:  MQLRVSSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH-----------LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATK
        +Q + SSS + CSRECR L+YVA+E VV+  MLQ R+ SS I C RE              L+Y A E+I++SN++Q R SSS I CS+++  L+Y   K
Subjt:  MQLRVSSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPH-----------LQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATK

Query:  RIIISNMVQPRGSSSPIWCNREDHNLHYGATERIIIFNMV
         +I+S M+QPR SSS I CNRE   L Y A + ++I NM+
Subjt:  RIIISNMVQPRGSSSPIWCNREDHNLHYGATERIIIFNMV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATTGAGAGTGTCATCATCTTCAATATGTTGCAGTCGAGAGTGTCGTCATCTTCGATATGTTGCAATTGAGAGTGTCGTCATCTTCGATATGTTGCAACCGAGAGT
TTTGTCATCTCTGATATGGTGCAGCCGAGAGGATCCTCATCTCCAATATTGTGCAACCGAGAGGATCCTCATCTCCAATATTGTGCAGCCGAGAGGATCATCATCTCCAA
TATGGTGCAGCCGAGAGAATCCTCATCTCCAATATTGTGCAACCAAAAGGATCATCATCTCCAATATGGTGCAACCGAGAGGATCATCATCTCCAATATGGTGCAACCGA
GAGGATCATAATCTCCATTATGGTGCAACCGAGAGGATCATCATCTTCAATATGGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAATTGAGAGTGTCATCATCTTCAATATGTTGCAGTCGAGAGTGTCGTCATCTTCGATATGTTGCAATTGAGAGTGTCGTCATCTTCGATATGTTGCAACCGAGAGT
TTTGTCATCTCTGATATGGTGCAGCCGAGAGGATCCTCATCTCCAATATTGTGCAACCGAGAGGATCCTCATCTCCAATATTGTGCAGCCGAGAGGATCATCATCTCCAA
TATGGTGCAGCCGAGAGAATCCTCATCTCCAATATTGTGCAACCAAAAGGATCATCATCTCCAATATGGTGCAACCGAGAGGATCATCATCTCCAATATGGTGCAACCGA
GAGGATCATAATCTCCATTATGGTGCAACCGAGAGGATCATCATCTTCAATATGGTGTAG
Protein sequenceShow/hide protein sequence
MQLRVSSSSICCSRECRHLRYVAIESVVIFDMLQPRVLSSLIWCSREDPHLQYCATERILISNIVQPRGSSSPIWCSRENPHLQYCATKRIIISNMVQPRGSSSPIWCNR
EDHNLHYGATERIIIFNMV