CuGenDBv2

Gene ID	PI0014892
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr05:14852471..14853335
RNA-Seq Expression	PI0014892
Synteny	PI0014892
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

9.5e-73

70.3

Show/hide

Query:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        M+S+ + +L  +KL   NYA+WK+ +N +L+IDDLRFVL+EECP     NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQE
Subjt:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMISEA
        MFGQ S QI+++A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLM  + 
Subjt:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMISEA

Query:  NK
         K
Subjt:  NK

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

9.5e-73

70.3

Show/hide

Query:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        M+S+ + +L  +KL   NYA+WK+ +N +L+IDDLRFVL+EECP     NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQE
Subjt:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMISEA
        MFGQ S QI+++A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLM  + 
Subjt:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMISEA

Query:  NK
         K
Subjt:  NK

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]

2.4e-76

78.46

Show/hide

Query:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++L   NYATWKS LNMILVI DLRFVLMEECPP   +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSL
        MFGQPSIQI+ EAIKYVYNARMKEG+SVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFLQF SN  MNKIEY MTTLL ELQTFQSL
Subjt:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSL

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

9.5e-73

70.3

Show/hide

Query:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        M+S+ + +L  +KL   NYA+WK+ +N +L+IDDLRFVL+EECP     NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQE
Subjt:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMISEA
        MFGQ S QI+++A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLM  + 
Subjt:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMISEA

Query:  NK
         K
Subjt:  NK

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]

2.4e-76

78.46

Show/hide

Query:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++L   NYATWKS LNMILVI DLRFVLMEECPP   +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSL
        MFGQPSIQI+ EAIKYVYNARMKEG+SVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFLQF SN  MNKIEY MTTLL ELQTFQSL
Subjt:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

4.6e-73

70.3

Show/hide

Query:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        M+S+ + +L  +KL   NYA+WK+ +N +L+IDDLRFVL+EECP     NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQE
Subjt:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMISEA
        MFGQ S QI+++A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLM  + 
Subjt:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMISEA

Query:  NK
         K
Subjt:  NK

A0A5A7TU93 Gag/pol protein

4.6e-73

70.3

Show/hide

Query:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        M+S+ + +L  +KL   NYA+WK+ +N +L+IDDLRFVL+EECP     NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQE
Subjt:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMISEA
        MFGQ S QI+++A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLM  + 
Subjt:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMISEA

Query:  NK
         K
Subjt:  NK

A0A5A7VA67 Gag/pol protein

1.2e-76

78.46

Show/hide

Query:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++L   NYATWKS LNMILVI DLRFVLMEECPP   +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSL
        MFGQPSIQI+ EAIKYVYNARMKEG+SVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFLQF SN  MNKIEY MTTLL ELQTFQSL
Subjt:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSL

A0A5D3CPJ6 Gag/pol protein

4.6e-73

70.3

Show/hide

Query:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        M+S+ + +L  +KL   NYA+WK+ +N +L+IDDLRFVL+EECP     NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQE
Subjt:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMISEA
        MFGQ S QI+++A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLM  + 
Subjt:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMISEA

Query:  NK
         K
Subjt:  NK

A0A5D3D0D9 Gag/pol protein

1.2e-76

78.46

Show/hide

Query:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++L   NYATWKS LNMILVI DLRFVLMEECPP   +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSL
        MFGQPSIQI+ EAIKYVYNARMKEG+SVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFLQF SN  MNKIEY MTTLL ELQTFQSL
Subjt:  MFGQPSIQIRYEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSL

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

6.7e-05

25.62

Show/hide

Query:  KNEKLIDG-NYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQ
        +N K  DG  YA WK  +  +L   D+  V+    P            +  D W KA   A+  I+  +SD       S +TARQI+++L  ++ + S+ 
Subjt:  KNEKLIDG-NYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQ

Query:  IRYEAIKYVYNARMKEGESVRE--HVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSF
         +    K + + ++    S+    H+ D ++   +A   GA I+E  ++S +L +LP  +
Subjt:  IRYEAIKYVYNARMKEGESVRE--HVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSF

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAATCGATGGTAATTATGCGACGTGGAAATCGAATCTGAATATGATTCTTGTAATCGATGATCTACGCTT
CGTCTTAATGGAGGAATGTCCTCCTTCCCTTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCTAATGAAAAGGCCCGAGTCTACATCT
TGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGG
TACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCGAATCTGTTAGAGAACATGTTCTCGACATGATGGTCAAATTCAACGTGGCAGAAACGAACGGGGC
GGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCATAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTA
CCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGATTTCTGAGGCAAATAAGAGATGTCCATGCGAGGAAGCTTCAGGCGAGGAGCTACGCGATCAACCAGGCGAT
CGTGAATATATGGCTATGTGGACCTGA

mRNA sequence

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Protein sequence

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MSSSIIALLKNEKLIDGNYATWKSNLNMILVIDDLRFVLMEECPPSLVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIR
YEAIKYVYNARMKEGESVREHVLDMMVKFNVAETNGAVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMISEANKRCPCEEASGEELRDQPGD
REYMAMWT

PI0014892 (gene) of Melon (PI 482460) v1 genome