; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0014942 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0014942
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr04:11808695..11809177
RNA-Seq ExpressionPI0014942
SyntenyPI0014942
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]5.6e-2544.3Show/hide
Query:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------
        E+F ++G N P G++ F AD   DT+ + MYS GL+MSPDD+  T+    S  R  SSGSK+KR G A ++ +I+  A+++ N+Q               
Subjt:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------

Query:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN
                     IPEL   DR RLMRILMRNV+DMKAFLEVPD +K  YC  IL+EN
Subjt:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN

KAA0044843.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-2543.67Show/hide
Query:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------
        E+F ++G N P G++ F AD   DT+   MYS GL+MSPDD+  T+    S  R  SSGSK+KR G A+++ +I+  A+++ N+Q               
Subjt:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------

Query:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN
                     IPEL   DR RLMRI+MRNV+DMKAFLEVPD +K  YC  IL+EN
Subjt:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-2544.3Show/hide
Query:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------
        E+F ++G N P G++ F AD  +DT+   MYS GL+MSPDD+  T+    S  R  SSGSK+KR G A ++ +I+  AM++ N+Q               
Subjt:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------

Query:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN
                     IPEL   DR RLMRI+MRNV+DMKAFLEVPD +K  YC  IL+EN
Subjt:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-2544.3Show/hide
Query:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------
        E+F ++G N P G++ F A+  +DT+   MYS+GL+MSPD++ GT+    S GR  SSGSK+KRGG  +++ +I+  A+++ N+Q               
Subjt:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------

Query:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN
                     IPEL   DR RLMRIL+ NVNDMKAFLEVPD +K  YC  ILEEN
Subjt:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]6.0e-3554.09Show/hide
Query:  METFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVND---------------
        +ETF ++G N P G+EGF AD  ND EI MMYSQG+DM  DDI GT+P  S+ GRTGSSGSK+K+GGQAVET+EII N M+  ND               
Subjt:  METFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVND---------------

Query:  ------------QGIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN
                    Q IPEL   DRVR M+ILM NV+DMKAFL++ DELKLDYC  I ++N
Subjt:  ------------QGIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein2.7e-2544.3Show/hide
Query:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------
        E+F ++G N P G++ F AD   DT+ + MYS GL+MSPDD+  T+    S  R  SSGSK+KR G A ++ +I+  A+++ N+Q               
Subjt:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------

Query:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN
                     IPEL   DR RLMRILMRNV+DMKAFLEVPD +K  YC  IL+EN
Subjt:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN

A0A5A7TMW5 Retrotransposon protein1.6e-2543.67Show/hide
Query:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------
        E+F ++G N P G++ F AD   DT+   MYS GL+MSPDD+  T+    S  R  SSGSK+KR G A+++ +I+  A+++ N+Q               
Subjt:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------

Query:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN
                     IPEL   DR RLMRI+MRNV+DMKAFLEVPD +K  YC  IL+EN
Subjt:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN

A0A5A7TYQ6 Retrotransposon protein1.2e-2544.3Show/hide
Query:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------
        E+F ++G N P G++ F AD  +DT+   MYS GL+MSPDD+  T+    S  R  SSGSK+KR G A ++ +I+  AM++ N+Q               
Subjt:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------

Query:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN
                     IPEL   DR RLMRI+MRNV+DMKAFLEVPD +K  YC  IL+EN
Subjt:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN

A0A5A7TZA5 Retrotransposon protein9.4e-2644.3Show/hide
Query:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------
        E+F ++G N P G++ F A+  +DT+   MYS+GL+MSPD++ GT+    S GR  SSGSK+KRGG  +++ +I+  A+++ N+Q               
Subjt:  ETFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQ---------------

Query:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN
                     IPEL   DR RLMRIL+ NVNDMKAFLEVPD +K  YC  ILEEN
Subjt:  ------------GIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN

A0A5A7V469 Retrotransposon protein2.9e-3554.09Show/hide
Query:  METFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVND---------------
        +ETF ++G N P G+EGF AD  ND EI MMYSQG+DM  DDI GT+P  S+ GRTGSSGSK+K+GGQAVET+EII N M+  ND               
Subjt:  METFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVND---------------

Query:  ------------QGIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN
                    Q IPEL   DRVR M+ILM NV+DMKAFL++ DELKLDYC  I ++N
Subjt:  ------------QGIPELITRDRVRLMRILMRNVNDMKAFLEVPDELKLDYCMTILEEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACATTCGTCAATATGGGGTTGAATGTGCCTAGAGGGTTCGAGGGATTTCCCGCTGATTACTGGAACGATACAGAGATCACTATGATGTACAGTCAGGGACTAGA
CATGTCACCTGATGACATCGCGGGCACACAACCCGGTCACTCTAGTGTGGGTAGGACTGGTTCAAGCGGATCGAAGAAGAAGCGGGGAGGCCAGGCGGTAGAGACTGTGG
AAATCATTTGGAATGCAATGGACTTCGTCAATGACCAGGGGATCCCTGAACTGATTACCCGCGACAGGGTGCGCCTTATGCGGATACTAATGCGCAATGTGAACGACATG
AAAGCATTTTTGGAGGTACCCGATGAGCTTAAGTTGGACTACTGCATGACCATTCTCGAAGAGAACGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGACATTCGTCAATATGGGGTTGAATGTGCCTAGAGGGTTCGAGGGATTTCCCGCTGATTACTGGAACGATACAGAGATCACTATGATGTACAGTCAGGGACTAGA
CATGTCACCTGATGACATCGCGGGCACACAACCCGGTCACTCTAGTGTGGGTAGGACTGGTTCAAGCGGATCGAAGAAGAAGCGGGGAGGCCAGGCGGTAGAGACTGTGG
AAATCATTTGGAATGCAATGGACTTCGTCAATGACCAGGGGATCCCTGAACTGATTACCCGCGACAGGGTGCGCCTTATGCGGATACTAATGCGCAATGTGAACGACATG
AAAGCATTTTTGGAGGTACCCGATGAGCTTAAGTTGGACTACTGCATGACCATTCTCGAAGAGAACGTTTGA
Protein sequenceShow/hide protein sequence
METFVNMGLNVPRGFEGFPADYWNDTEITMMYSQGLDMSPDDIAGTQPGHSSVGRTGSSGSKKKRGGQAVETVEIIWNAMDFVNDQGIPELITRDRVRLMRILMRNVNDM
KAFLEVPDELKLDYCMTILEENV