CuGenDBv2

Gene ID	PI0014950
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	WD_REPEATS_REGION domain-containing protein
Genome location	chr02:25213759..25214670
RNA-Seq Expression	PI0014950
Synteny	PI0014950
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR015943 - WD40/YVTN repeat-like-containing domain superfamily IPR036322 - WD40-repeat-containing domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ADN33856.1 nucleotide binding protein [Cucumis melo subsp. melo]

8.8e-74

82.68

Show/hide

Query:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH
        MKD +NTWKPELLHRNLHSSAVMGVS MQMKQIVLSAGADKR LGFDVQVG+ILFKHQLESKCMSVLPNPCDFNLF VQT   GNQLRLFDIRLEQKEVH
Subjt:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH

Query:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS
        SF WKQENS+SQSALIK SWSPNGL+LT              YNSHMPSQSLKAHQKRVFKAVWL SLPFLV ISSD +
Subjt:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS

TYJ98411.1 nucleotide binding protein [Cucumis melo var. makuwa]

8.8e-74

82.68

Show/hide

Query:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH
        MKD +NTWKPELLHRNLHSSAVMGVS MQMKQIVLSAGADKR LGFDVQVG+ILFKHQLESKCMSVLPNPCDFNLF VQT   GNQLRLFDIRLEQKEVH
Subjt:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH

Query:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS
        SF WKQENS+SQSALIK SWSPNGL+LT              YNSHMPSQSLKAHQKRVFKAVWL SLPFLV ISSD +
Subjt:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS

XP_008464363.1 PREDICTED: uncharacterized protein LOC103502273 isoform X1 [Cucumis melo]

8.8e-74

82.68

Show/hide

Query:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH
        MKD +NTWKPELLHRNLHSSAVMGVS MQMKQIVLSAGADKR LGFDVQVG+ILFKHQLESKCMSVLPNPCDFNLF VQT   GNQLRLFDIRLEQKEVH
Subjt:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH

Query:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS
        SF WKQENS+SQSALIK SWSPNGL+LT              YNSHMPSQSLKAHQKRVFKAVWL SLPFLV ISSD +
Subjt:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS

XP_011648713.1 uncharacterized protein LOC101206361 [Cucumis sativus]

4.0e-74

82.68

Show/hide

Query:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQTG---NQLRLFDIRLEQKEVH
        M+D +NTWKPELLHRNLHSSAVMGVS MQMKQIVLSAG+DKRLLGFDVQVG+ LFKHQLESKCMSVLPNPCDFNLF+VQTG   NQLRLFDIRLEQKEVH
Subjt:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQTG---NQLRLFDIRLEQKEVH

Query:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS
        SF WKQENSESQSALIK SWSPNGLHLT              YNSHMPSQSLKAHQKRVFKAVWL SLPFLV ISSD +
Subjt:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS

XP_016903192.1 PREDICTED: uncharacterized protein LOC103502273 isoform X2 [Cucumis melo]

8.8e-74

82.68

Show/hide

Query:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH
        MKD +NTWKPELLHRNLHSSAVMGVS MQMKQIVLSAGADKR LGFDVQVG+ILFKHQLESKCMSVLPNPCDFNLF VQT   GNQLRLFDIRLEQKEVH
Subjt:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH

Query:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS
        SF WKQENS+SQSALIK SWSPNGL+LT              YNSHMPSQSLKAHQKRVFKAVWL SLPFLV ISSD +
Subjt:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRK6 WD_REPEATS_REGION domain-containing protein

1.9e-74

82.68

Show/hide

Query:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQTG---NQLRLFDIRLEQKEVH
        M+D +NTWKPELLHRNLHSSAVMGVS MQMKQIVLSAG+DKRLLGFDVQVG+ LFKHQLESKCMSVLPNPCDFNLF+VQTG   NQLRLFDIRLEQKEVH
Subjt:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQTG---NQLRLFDIRLEQKEVH

Query:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS
        SF WKQENSESQSALIK SWSPNGLHLT              YNSHMPSQSLKAHQKRVFKAVWL SLPFLV ISSD +
Subjt:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS

A0A1S3CLR0 uncharacterized protein LOC103502273 isoform X1

4.3e-74

82.68

Show/hide

Query:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH
        MKD +NTWKPELLHRNLHSSAVMGVS MQMKQIVLSAGADKR LGFDVQVG+ILFKHQLESKCMSVLPNPCDFNLF VQT   GNQLRLFDIRLEQKEVH
Subjt:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH

Query:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS
        SF WKQENS+SQSALIK SWSPNGL+LT              YNSHMPSQSLKAHQKRVFKAVWL SLPFLV ISSD +
Subjt:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS

A0A5A7UU99 Nucleotide binding protein

4.3e-74

82.68

Show/hide

Query:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH
        MKD +NTWKPELLHRNLHSSAVMGVS MQMKQIVLSAGADKR LGFDVQVG+ILFKHQLESKCMSVLPNPCDFNLF VQT   GNQLRLFDIRLEQKEVH
Subjt:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH

Query:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS
        SF WKQENS+SQSALIK SWSPNGL+LT              YNSHMPSQSLKAHQKRVFKAVWL SLPFLV ISSD +
Subjt:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS

A0A5D3BIA6 Nucleotide binding protein

4.3e-74

82.68

Show/hide

Query:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH
        MKD +NTWKPELLHRNLHSSAVMGVS MQMKQIVLSAGADKR LGFDVQVG+ILFKHQLESKCMSVLPNPCDFNLF VQT   GNQLRLFDIRLEQKEVH
Subjt:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH

Query:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS
        SF WKQENS+SQSALIK SWSPNGL+LT              YNSHMPSQSLKAHQKRVFKAVWL SLPFLV ISSD +
Subjt:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS

E5GBL5 Nucleotide binding protein

4.3e-74

82.68

Show/hide

Query:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH
        MKD +NTWKPELLHRNLHSSAVMGVS MQMKQIVLSAGADKR LGFDVQVG+ILFKHQLESKCMSVLPNPCDFNLF VQT   GNQLRLFDIRLEQKEVH
Subjt:  MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVH

Query:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS
        SF WKQENS+SQSALIK SWSPNGL+LT              YNSHMPSQSLKAHQKRVFKAVWL SLPFLV ISSD +
Subjt:  SFRWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G19920.1 Transducin/WD40 repeat-like superfamily protein

2.8e-46

53.14

Show/hide

Query:  HNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVHSFRW
        +N WKP LLHR+LHSSAVMGV+ M+    VLS G D+R +GFD +   + FKH+L+++C +++PNP D NL +V T     QLRL+D+RL Q E+ SF W
Subjt:  HNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQT---GNQLRLFDIRLEQKEVHSFRW

Query:  KQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS
        KQE+SESQSALI  SWSP+GLH++              YN+  PS S+KAH+KRVFKA W  S P LV ISSD +
Subjt:  KQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS

AT5G50970.1 transducin family protein / WD-40 repeat family protein

3.4e-55

59.89

Show/hide

Query:  DIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQTG---NQLRLFDIRLEQKEVHSF
        D  N WK + LHRNLHS+AVMGV  M+ K ++LS GADKR+ GFDVQVG   +KHQ++ KCMSVL NPCDFNLF+VQ+G    QLRLFDIRL + E+HSF
Subjt:  DIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQTG---NQLRLFDIRLEQKEVHSF

Query:  RWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS
         WKQ++SESQSALI  SWSP+GL++T              YN+  P+QS+KAHQKRVFKA W +S P L+ ISSD +
Subjt:  RWKQENSESQSALIKHSWSPNGLHLT--------------YNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAAGATATACATAACACGTGGAAACCAGAGCTATTGCACAGGAATCTGCACTCTTCTGCTGTCATGGGTGTCTCTTGGATGCAGATGAAGCAAATCGTACTTTCTGC
AGGTGCAGACAAGAGACTCCTTGGTTTTGATGTTCAAGTAGGAAATATACTCTTCAAGCATCAACTAGAGAGTAAATGTATGAGTGTCTTGCCTAATCCATGTGACTTTA
ACCTGTTCGTGGTTCAAACAGGAAATCAACTTAGATTATTTGACATTAGATTGGAACAGAAAGAAGTCCATAGTTTTAGGTGGAAGCAAGAAAACAGTGAATCTCAATCA
GCTTTGATAAAGCATTCATGGTCACCAAATGGATTACACTTAACGTATAATTCTCACATGCCATCTCAATCACTTAAAGCTCATCAGAAGCGCGTCTTCAAAGCTGTTTG
GCTCCATTCTCTTCCTTTTCTTGTTTTCATTTCATCTGATTTCTCATGTCGATCGACGTTTTTGCACTTTCCCAAAACAACTTACCAAGAGGTGATTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKDIHNTWKPELLHRNLHSSAVMGVSWMQMKQIVLSAGADKRLLGFDVQVGNILFKHQLESKCMSVLPNPCDFNLFVVQTGNQLRLFDIRLEQKEVHSFRWKQENSESQS
ALIKHSWSPNGLHLTYNSHMPSQSLKAHQKRVFKAVWLHSLPFLVFISSDFSCRSTFLHFPKTTYQEVI

PI0014950 (gene) of Melon (PI 482460) v1 genome