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PI0014967 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0014967
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr02:14601387..14601613
RNA-Seq ExpressionPI0014967
SyntenyPI0014967
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025503.1 putative Polyprotein [Cucumis melo var. makuwa]5.1e-1373.21Show/hide
Query:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD
        MAG FQ D+MS DLN  FRFEGAHFK WKQKMLFFLTLKKV  ACTT+K K    D
Subjt:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD

KAA0042338.1 putative Polyprotein [Cucumis melo var. makuwa]3.9e-1378.43Show/hide
Query:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIK
        MAG  Q+D+MSSDLN  FRFEGAHFK WKQKMLFFLTLKKV  ACTT+K K
Subjt:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIK

KAA0048414.1 uncharacterized protein E6C27_scaffold264G001400 [Cucumis melo var. makuwa]7.9e-1473.21Show/hide
Query:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD
        MAG  Q+D+MSSDLN  FRFEGAHFK WKQKMLFFLTLKKV  ACTT+K+K    D
Subjt:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD

KAA0060458.1 uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa]8.7e-1371.43Show/hide
Query:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD
        MAG  Q+D+MSSDLN  FRFEGAHFK WKQK+LFFLTLKKV  ACTT+K K    D
Subjt:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD

KAA0065374.1 uncharacterized protein E6C27_scaffold17G00360 [Cucumis melo var. makuwa]2.3e-1371.43Show/hide
Query:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD
        M G  Q+D+MSSDLN  FRFEGAHFK WKQKMLFFLTLKKV  ACTT+K+K    D
Subjt:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD

TrEMBL top hitse value%identityAlignment
A0A5A7SLG1 Putative Polyprotein2.5e-1373.21Show/hide
Query:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD
        MAG FQ D+MS DLN  FRFEGAHFK WKQKMLFFLTLKKV  ACTT+K K    D
Subjt:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD

A0A5A7THP6 Putative Polyprotein1.9e-1378.43Show/hide
Query:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIK
        MAG  Q+D+MSSDLN  FRFEGAHFK WKQKMLFFLTLKKV  ACTT+K K
Subjt:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIK

A0A5A7UYY4 Uncharacterized protein4.2e-1371.43Show/hide
Query:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD
        MAG  Q+D+MSSDLN  FRFEGAHFK WKQK+LFFLTLKKV  ACTT+K K    D
Subjt:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD

A0A5D3BEH3 Uncharacterized protein3.8e-1473.21Show/hide
Query:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD
        MAG  Q+D+MSSDLN  FRFEGAHFK WKQKMLFFLTLKKV  ACTT+K+K    D
Subjt:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD

A0A5D3DC59 Reverse transcriptase Ty1/copia-type domain-containing protein1.1e-1371.43Show/hide
Query:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD
        M G  Q+D+MSSDLN  FRFEGAHFK WKQKMLFFLTLKKV  ACTT+K+K    D
Subjt:  MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGTTCATTTCAGAATGATGTGATGTCTTCAGATCTTAACCACTCATTTCGCTTTGAAGGAGCACATTTTAAGAATTGGAAGCAAAAGATGTTATTCTTCCTTAC
ATTGAAGAAAGTTGTTGCAGCTTGTACCACTAAAAAAATAAAGTCTTACCGCATGGACAGAGACAAACTTCATTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGGTTCATTTCAGAATGATGTGATGTCTTCAGATCTTAACCACTCATTTCGCTTTGAAGGAGCACATTTTAAGAATTGGAAGCAAAAGATGTTATTCTTCCTTAC
ATTGAAGAAAGTTGTTGCAGCTTGTACCACTAAAAAAATAAAGTCTTACCGCATGGACAGAGACAAACTTCATTTGTAA
Protein sequenceShow/hide protein sequence
MAGSFQNDVMSSDLNHSFRFEGAHFKNWKQKMLFFLTLKKVVAACTTKKIKSYRMDRDKLHL