CuGenDBv2

Gene ID	PI0014968
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	chr10:15692676..15692897
RNA-Seq Expression	PI0014968
Synteny	PI0014968
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040414.1 uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]

1.4e-22

82.19

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Query:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV
        MS EEG  SPVEQVIEGPVTR RKEQHS TR SKSK PAVREHVDTRLTNL+QG++DVQL+VGRLS+NF+ELV
Subjt:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV

KAA0041284.1 uncharacterized protein E6C27_scaffold128G002760 [Cucumis melo var. makuwa]

1.4e-22

82.19

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Query:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV
        MS EEG  SPVEQVIEGPVTR RKEQHS TR SKSK PAVREHV+TRLTNL+QG++DVQL+VGRLSDNF+ELV
Subjt:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV

KAA0065760.1 polyprotein [Cucumis melo var. makuwa]

1.4e-22

82.19

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Query:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV
        MS EEG  SPVEQVIEGPVTR RKEQHS TR SKSK PAVREHVDTRLTNL+QG++DVQL+VGRLS+NF+ELV
Subjt:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV

TYK02748.1 uncharacterized protein E5676_scaffold145G00020 [Cucumis melo var. makuwa]

1.4e-22

82.19

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Query:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV
        MS EEG  SPVEQVIEGPVTR RKEQHS TR SKSK PAVREHV+TRLTNL+QG++DVQL+VGRLSDNF+ELV
Subjt:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV

XP_008446938.1 PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo]

1.4e-22

82.19

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Query:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV
        MS EEG  SPVEQVIEGPVTR RKEQHS TR SKSK PAVREHVDTRLTNL+QG++DVQL+VGRLS+NF+ELV
Subjt:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B5C5 uncharacterized protein LOC103486198

6.9e-23

82.19

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Query:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV
        MS EEG  SPVEQVIEGPVTR RKEQHS TR SKSK PAVREHV+TRLTNL+QG++DVQL+VGRLSDNF+ELV
Subjt:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV

A0A5A7TAA5 Uncharacterized protein

6.9e-23

82.19

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Query:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV
        MS EEG  SPVEQVIEGPVTR RKEQHS TR SKSK PAVREHVDTRLTNL+QG++DVQL+VGRLS+NF+ELV
Subjt:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV

A0A5A7TCV2 Integrase catalytic domain-containing protein

6.9e-23

82.19

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Query:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV
        MS EEG  SPVEQVIEGPVTR RKEQHS TR SKSK PAVREHV+TRLTNL+QG++DVQL+VGRLSDNF+ELV
Subjt:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV

A0A5A7VEX8 Polyprotein

6.9e-23

82.19

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Query:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV
        MS EEG  SPVEQVIEGPVTR RKEQHS TR SKSK PAVREHVDTRLTNL+QG++DVQL+VGRLS+NF+ELV
Subjt:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV

A0A5D3BUU0 Integrase catalytic domain-containing protein

6.9e-23

82.19

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Query:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV
        MS EEG  SPVEQVIEGPVTR RKEQHS TR SKSK PAVREHV+TRLTNL+QG++DVQL+VGRLSDNF+ELV
Subjt:  MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCCAACGAGGAAGGAGATGTCTCACCGGTAGAGCAGGTCATTGAAGGGCCTGTCACTCGAGAAAGGAAAGAGCAACATTCTCTAACCCGATACTCTAAGTCCAAGGA
ACCGGCTGTAAGGGAGCACGTCGACACTCGCCTTACTAACCTTAAGCAAGGCTTGAAGGATGTTCAGCTCTCGGTTGGTAGGCTAAGTGACAACTTCGATGAGTTGGTCT
AA

mRNA sequence

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Protein sequence

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MSNEEGDVSPVEQVIEGPVTRERKEQHSLTRYSKSKEPAVREHVDTRLTNLKQGLKDVQLSVGRLSDNFDELV

PI0014968 (gene) of Melon (PI 482460) v1 genome