CuGenDBv2

Gene ID	PI0015088
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1
Genome location	chr06:8334044..8336448
RNA-Seq Expression	PI0015088
Synteny	PI0015088
Gene Ontology terms	GO:0042793 - plastid transcription (biological process) GO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR038958 - Protein plastid transcriptionally active 7

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0050522.1 KH domain-containing protein [Cucumis melo var. makuwa]

2.1e-85

97.04

Show/hide

Query:  MATLISTLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE
        MAT ISTLSFASP LPLRIE NPRISPALNFRPPFQVVARKQRNGEVSGRRVW+RRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSE
Subjt:  MATLISTLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

XP_004146231.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Cucumis sativus]

1.5e-83

94.67

Show/hide

Query:  MATLISTLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE
        MAT ISTLSFASP LPLRIE NPRISPALNFRPPFQ+VARKQ++GEVSGRRVW+RRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSE
Subjt:  MATLISTLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

XP_008455984.1 PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1 [Cucumis melo]

2.1e-85

97.04

Show/hide

Query:  MATLISTLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE
        MAT ISTLSFASP LPLRIE NPRISPALNFRPPFQVVARKQRNGEVSGRRVW+RRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSE
Subjt:  MATLISTLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

XP_016901917.1 PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X2 [Cucumis melo]

1.0e-79

98.06

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Query:  LPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
        LPLRIE NPRISPALNFRPPFQVVARKQRNGEVSGRRVW+RRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
Subjt:  LPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA

Query:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

XP_038891427.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Benincasa hispida]

8.3e-82

94.08

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Query:  MATLISTLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE
        M+T ISTLSFASPLLP RIEV PRISPA NFR PFQVVARKQRNGE SGRRVW+RRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE
Subjt:  MATLISTLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPH+LKQE+T
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9J8 Uncharacterized protein

7.3e-84

94.67

Show/hide

Query:  MATLISTLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE
        MAT ISTLSFASP LPLRIE NPRISPALNFRPPFQ+VARKQ++GEVSGRRVW+RRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSE
Subjt:  MATLISTLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

A0A1S3C3E7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1

1.0e-85

97.04

Show/hide

Query:  MATLISTLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE
        MAT ISTLSFASP LPLRIE NPRISPALNFRPPFQVVARKQRNGEVSGRRVW+RRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSE
Subjt:  MATLISTLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

A0A1S4E109 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X2

4.9e-80

98.06

Show/hide

Query:  LPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
        LPLRIE NPRISPALNFRPPFQVVARKQRNGEVSGRRVW+RRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
Subjt:  LPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA

Query:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

A0A5A7U3Y9 KH domain-containing protein

1.0e-85

97.04

Show/hide

Query:  MATLISTLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE
        MAT ISTLSFASP LPLRIE NPRISPALNFRPPFQVVARKQRNGEVSGRRVW+RRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSE
Subjt:  MATLISTLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

A0A5D3CIV3 KH domain-containing protein

4.2e-79

97.42

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Query:  LPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
        LPLRIE NPRIS ALNFRPPFQVVARKQRNGEVSGRRVW+RRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
Subjt:  LPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA

Query:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

SwissProt top hits

e value

%identity

Alignment

Q8VZV9 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7

9.0e-47

61.35

Show/hide

Query:  TLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDF
        T S  S +LP+   ++ R     N R  FQ         + +GRRVW+RR LTKKDDM  YKM R+PF+EEQVRK++E GK++TMDIE+LLL EDNRF+F
Subjt:  TLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDF

Query:  VNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        VN VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  VNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

Arabidopsis top hits

e value

%identity

Alignment

AT5G24314.1 plastid transcriptionally active7

6.4e-48

61.35

Show/hide

Query:  TLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDF
        T S  S +LP+   ++ R     N R  FQ         + +GRRVW+RR LTKKDDM  YKM R+PF+EEQVRK++E GK++TMDIE+LLL EDNRF+F
Subjt:  TLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDF

Query:  VNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        VN VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  VNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

AT5G24314.2 plastid transcriptionally active7

1.0e-45

58.48

Show/hide

Query:  TLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRK--------LTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLL
        T S  S +LP+   ++ R     N R  FQ         + +GRRVW+RR         LTKKDDM  YKM R+PF+EEQVRK++E GK++TMDIE+LLL
Subjt:  TLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRK--------LTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLL

Query:  SEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
         EDNRF+FVN VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  SEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTACTCTAATCTCAACACTCTCCTTTGCTTCCCCTTTATTGCCGCTCAGGATTGAGGTGAATCCCCGAATTTCTCCTGCCTTGAACTTTCGTCCCCCGTTTCAGGT
GGTCGCTAGAAAACAGAGAAATGGTGAAGTTAGTGGTCGGCGAGTGTGGCAACGAAGAAAATTGACAAAGAAGGATGACATGTCAATCTACAAAATGGATCGAATCCCAT
TCCTTGAAGAACAGGTAAGGAAGGTAAAGGAACAGGGGAAGCTCATAACAATGGACATTGAAAGACTATTATTATCAGAGGACAACCGCTTTGATTTTGTGAATGAGGTT
GCAGCTGAGGCTAAGGAATATGTCGAGAGCAACCGCGATGAATATGGAGGATCCAAGAAAGCCATTCTTCACGTTCTTAGCAACCGAGTGAACGATGCAGGGTTTTATCG
GCCAGATGCTTATGCAGAAGATGACCCATTTAAACCCGGACCTCATTATCTGAAACAAGAATTTACGTGA

mRNA sequence

Show/hide mRNA sequence

CTAAAGTTATAATATCATTCGAAAATGAAGATAGGACAGCCATGGCTACTCTAATCTCAACACTCTCCTTTGCTTCCCCTTTATTGCCGCTCAGGATTGAGGTGAATCCC
CGAATTTCTCCTGCCTTGAACTTTCGTCCCCCGTTTCAGGTGGTCGCTAGAAAACAGAGAAATGGTGAAGTTAGTGGTCGGCGAGTGTGGCAACGAAGAAAATTGACAAA
GAAGGATGACATGTCAATCTACAAAATGGATCGAATCCCATTCCTTGAAGAACAGGTAAGGAAGGTAAAGGAACAGGGGAAGCTCATAACAATGGACATTGAAAGACTAT
TATTATCAGAGGACAACCGCTTTGATTTTGTGAATGAGGTTGCAGCTGAGGCTAAGGAATATGTCGAGAGCAACCGCGATGAATATGGAGGATCCAAGAAAGCCATTCTT
CACGTTCTTAGCAACCGAGTGAACGATGCAGGGTTTTATCGGCCAGATGCTTATGCAGAAGATGACCCATTTAAACCCGGACCTCATTATCTGAAACAAGAATTTACGTG
AAGAATCTGATTACAAAATCCATTTTCTTATACAGACTATCAATGGATTAATCTGATTTTTCCAGTTTTTAAATGTTAGCTAGTGCCTATGTCTCTTCTGATTAAGAATT
GTGCTCGCCTCATGAGTTTTTTCTAACCAAATATACCTCTTTAAACTGCTACTTTTCTATTCGTTATGTTTCATCCAACATTCCCAAAAGGAGGGAAGATTGTTATCGAC
AAACTTATGAAACCATTAGAAAGTTTCTTTTATAAACTCCATTTGTTGTTTTCCTC

Protein sequence

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MATLISTLSFASPLLPLRIEVNPRISPALNFRPPFQVVARKQRNGEVSGRRVWQRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEV
AAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

PI0015088 (gene) of Melon (PI 482460) v1 genome