CuGenDBv2

Gene ID	PI0015124
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr05:9711646..9712232
RNA-Seq Expression	PI0015124
Synteny	PI0015124
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

2.2e-48

62.56

Show/hide

Query:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQEMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        NVAE NG VIDE SQVSFILESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

2.2e-48

62.56

Show/hide

Query:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQEMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        NVAE NG VIDE SQVSFILESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

2.2e-48

62.56

Show/hide

Query:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQEMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        NVAE NG VIDE SQVSFILESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

2.2e-48

62.56

Show/hide

Query:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP     NA+QT R+ Y                +  +   K+ ES  T+  IM+SLQEMFGQ S QI+H  +KY+YNARM EG SVREHVL++MV F
Subjt:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        NVAE NG VIDE SQVSFILESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

2.2e-48

62.56

Show/hide

Query:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQEMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        NVAE NG VIDE SQVSFILESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.0e-48

62.56

Show/hide

Query:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQEMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        NVAE NG VIDE SQVSFILESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

A0A5A7TU93 Gag/pol protein

1.0e-48

62.56

Show/hide

Query:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQEMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        NVAE NG VIDE SQVSFILESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

A0A5A7TWB9 Gag/pol protein

1.0e-48

62.56

Show/hide

Query:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQEMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        NVAE NG VIDE SQVSFILESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

A0A5A7V6N0 Gag/pol protein

1.0e-48

62.56

Show/hide

Query:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP     NA+QT R+ Y                +  +   K+ ES  T+  IM+SLQEMFGQ S QI+H  +KY+YNARM EG SVREHVL++MV F
Subjt:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        NVAE NG VIDE SQVSFILESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

A0A5D3CPJ6 Gag/pol protein

1.0e-48

62.56

Show/hide

Query:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQEMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        NVAE NG VIDE SQVSFILESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  NVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGGAATGTCCTCATTCCTCTATTCGAAATGCATCCCAGACCGCCAGGGATGCATATACCGCTGGACAAAGGCCAATGAAAAGGCCTGAGTCTACATCTTGGCCAAT
CATGGAGTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGACACAAGACTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGTCAATCTGTTAGAGAAC
ATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACCAACGGGGTGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTT
CAATTCTGTAGCAATGCAGTTATGAACCAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGG
AGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MEECPHSSIRNASQTARDAYTAGQRPMKRPESTSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFL
QFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGTKKI

PI0015124 (gene) of Melon (PI 482460) v1 genome