CuGenDBv2

Gene ID	PI0015187
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Translation elongation factor EF1B/ribosomal protein S6 family protein
Genome location	chr06:26525000..26529802
RNA-Seq Expression	PI0015187
Synteny	PI0015187
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008449133.1 PREDICTED: 30S ribosomal protein S6 [Cucumis melo]

5.3e-67

89.68

Show/hide

Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ
        MPLYD MLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYG+KKLDGRYYQGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRDRQ
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ

Query:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE
        YGLEFLSEDDDK+   +FSR+NLMG    DEDDDDDDDDDDDEEY+VEQED KAE
Subjt:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE

XP_011650517.1 uncharacterized protein LOC101218568 [Cucumis sativus]

1.3e-65

87.1

Show/hide

Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ
        MPLYD M LMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYG+KKLDGRYYQGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRDRQ
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ

Query:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE
        +GLEFL EDDDKN L K SR+NLM  GD+DED+D+D+DDDDDEEYNVE +D KAE
Subjt:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE

XP_022936695.1 uncharacterized protein LOC111443208 [Cucurbita moschata]

1.1e-61

83.87

Show/hide

Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYG+KKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRWLLVKHRD +
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ

Query:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE
        YGLEFLSEDD KN LNKF R  ++  GD+D D++DDDDDDDDEEY+VEQE+   E
Subjt:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

2.3e-62

84.52

Show/hide

Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYG+KKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRWLLVKHRD +
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ

Query:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE
        YGLEFLSEDD KN LNKF R N++  GD+D D++DDDDDDDDEEY+VEQE+   E
Subjt:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE

XP_038905169.1 uncharacterized protein LOC120091279 [Benincasa hispida]

1.9e-61

83.87

Show/hide

Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYG+KKL+GRYYQGQLMQMTMMATPN+NKEL YLNKEDRLLRWLLVKHRD +
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ

Query:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE
        YGLEFLSE+D K+ L KF R++++ D DEDE D+ DDDD+DDEEYNVEQE  +AE
Subjt:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2X6 Uncharacterized protein

6.3e-66

87.1

Show/hide

Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ
        MPLYD M LMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYG+KKLDGRYYQGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRDRQ
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ

Query:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE
        +GLEFL EDDDKN L K SR+NLM  GD+DED+D+D+DDDDDEEYNVE +D KAE
Subjt:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE

A0A1S3BLC8 30S ribosomal protein S6

2.6e-67

89.68

Show/hide

Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ
        MPLYD MLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYG+KKLDGRYYQGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRDRQ
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ

Query:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE
        YGLEFLSEDDDK+   +FSR+NLMG    DEDDDDDDDDDDDEEY+VEQED KAE
Subjt:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE

A0A6J1CN79 uncharacterized protein LOC111013137

3.6e-61

83.23

Show/hide

Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYG+KKLDGR+YQGQLMQMTMMATPNMNKEL YLNKEDR+LRWLLVKHRD +
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ

Query:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE
        YGLEFLSEDD K  L+KF RI +MGD   D+ D++DDDDD+DEEY+VEQE++K E
Subjt:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE

A0A6J1FEF6 uncharacterized protein LOC111443208

5.5e-62

83.87

Show/hide

Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYG+KKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRWLLVKHRD +
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ

Query:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE
        YGLEFLSEDD KN LNKF R  ++  GD+D D++DDDDDDDDEEY+VEQE+   E
Subjt:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE

A0A6J1KXT7 uncharacterized protein LOC111498530

1.5e-59

82.67

Show/hide

Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVV D+KSFGVVQLGYG+KKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRWLLVKHRD +
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ

Query:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQE
        YGLEFLSEDD KN LNKF R +++GD D DE+DDDDDDDD ++E    +E
Subjt:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

4.8e-42

62.96

Show/hide

Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ RNGV+ +IKSFG V+LGYG++KLDGR+YQGQLMQ+TMM TPNMNKEL YLNKED+LLRWLLVKHRD +
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ

Query:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDD
         G     ++D     N+ +  +L      DEDD++
Subjt:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

2.1e-37

59.26

Show/hide

Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ RNGV+ +IKSFG V+LGYG++KLDGR+Y     Q+TMM TPNMNKEL YLNKED+LLRWLLVKHRD +
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQ

Query:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDD
         G     ++D     N+ +  +L      DEDD++
Subjt:  YGLEFLSEDDDKNALNKFSRINLMGDGDEDEDDDD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCTTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGGAGAAATGGGGTTGT
CTGTGACATTAAATCATTTGGTGTTGTCCAATTGGGTTATGGTGTTAAGAAGCTTGATGGAAGATATTATCAGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCA
ACATGAACAAGGAGTTGCTTTACTTAAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCACCGTGACAGACAATATGGCCTGGAATTCCTTAGCGAAGATGAT
GACAAGAATGCACTCAACAAATTTAGTCGAATTAACTTGATGGGTGATGGAGATGAAGATGAAGATGACGATGACGATGACGATGACGACGACGATGAAGAATACAACGT
GGAACAAGAAGATGCGAAAGCAGAGTGA

mRNA sequence

Show/hide mRNA sequence

AAAAAAACCATATTAGAACAACATTTGAAATTCCTCTTTATTATCGTGTTAGGGGATTGAATCTTTAAAGGAGAAAACCATTTTTCCATCAACCCTATTTCACGTTCTGT
CACACACCCTCCCATTAACAGCCACTACATCCCGCACGCCGCTCGTGCCCGACACAATATCAGCGGCGGCTGCCGTACGCTGCACACTTATCTGCTGGATTCTCATACTT
CGGACGAACTCTCCGCCTCTCCCTCCCTCTCACACTCTCTCGCTTCTCCAACCAATCAGAGCTACTTGTCTCTGTTGTTATCTCAGAAATAGAAACAGTGGTTTACCCCG
GCTGTTGGTGAGATCGTACCACTCCTCACGCCTACTGCCGCTCATTTTTTAGATCCCAAGGAGTTAAGTGAAGGAAACGGCGCAGGCTGCCATTTCTCTCAGAAGTTCGA
AATACGAATTTTAGTTCTAAAGAACAGAAGATTAAGATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCTTTGTTGGACTTGGTTGCTAG
AGTGGGCAAGCATGTGTTCAGGAGAAATGGGGTTGTCTGTGACATTAAATCATTTGGTGTTGTCCAATTGGGTTATGGTGTTAAGAAGCTTGATGGAAGATATTATCAGG
GCCAACTTATGCAGATGACGATGATGGCTACTCCCAACATGAACAAGGAGTTGCTTTACTTAAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCACCGTGAC
AGACAATATGGCCTGGAATTCCTTAGCGAAGATGATGACAAGAATGCACTCAACAAATTTAGTCGAATTAACTTGATGGGTGATGGAGATGAAGATGAAGATGACGATGA
CGATGACGATGACGACGACGATGAAGAATACAACGTGGAACAAGAAGATGCGAAAGCAGAGTGAATTTTGCTAGTCTCTATTTTCATGGCCCAACTTTCAATTTGTTGGA
AGGATCTCTTGTACCATTTTTGGATTCTAGACAGACAAATAAAGAGGTCCATAGTTTCTTTAGCTGTCCTTGTCCATATTATCTGTTTCTCAGAAACAAAGATCCATAAA
TGTCTTTTTCTCAAACTTCCATTAGAATGGGATGTTTTCCAGGTCTTGGAATTCAGCTCTAAATGAAAAGTTCAAGAAATGAAAATCCTTGTCTGTCTTTTAAAGCTATT
GTACTTTATTCTTGCTTTTATTGACATTGTATTGAATGAAACTAGAGCAAATATGAGGTTTGATGAAGATCTGGTTGAGATCA

Protein sequence

Show/hide protein sequence

MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKELLYLNKEDRLLRWLLVKHRDRQYGLEFLSEDD
DKNALNKFSRINLMGDGDEDEDDDDDDDDDDDEEYNVEQEDAKAE

PI0015187 (gene) of Melon (PI 482460) v1 genome