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PI0015207 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0015207
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionBeta-galactosidase
Genome locationchr08:2682330..2682845
RNA-Seq ExpressionPI0015207
SyntenyPI0015207
Gene Ontology termsGO:0000723 - telomere maintenance (biological process)
GO:0006116 - NADH oxidation (biological process)
GO:0006303 - double-strand break repair via nonhomologous end joining (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0043564 - Ku70:Ku80 complex (cellular component)
GO:0003678 - DNA helicase activity (molecular function)
GO:0003684 - damaged DNA binding (molecular function)
GO:0003954 - NADH dehydrogenase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0005525 - GTP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0042162 - telomeric DNA binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034386.1 Beta-galactosidase [Cucumis melo var. makuwa]5.1e-4767.63Show/hide
Query:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI
        ++Y+T ++  STG FSGEKLN  NYFSWSQ ++M LEG+++FGFL G+I  P P D  ER  KGED L R  LINS++P+IGKPLLYATT KD+ DTTQ 
Subjt:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI

Query:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
        LYS RQNAS LYTLRKQVH CKQGT+DVT+YFNKLSL+W
Subjt:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
TYJ97256.1 Beta-galactosidase [Cucumis melo var. makuwa]5.1e-4767.63Show/hide
Query:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI
        ++Y+T ++  STG FSGEKLN  NYFSWSQ ++M LEG+++FGFL G+I  P P D  ER  KGED L R  LINS++P+IGKPLLYATT KD+ DTTQ 
Subjt:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI

Query:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
        LYS RQNAS LYTLRKQVH CKQGT+DVT+YFNKLSL+W
Subjt:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]5.1e-4767.63Show/hide
Query:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI
        ++Y+T ++  STG FSGEKLN  NYFSWSQ ++M LEG+++FGFL G+I  P P D  ER  KGED L R  LINS++P+IGKPLLYATT KD+ DTTQ 
Subjt:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI

Query:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
        LYS RQNAS LYTLRKQVH CKQGT+DVT+YFNKLSL+W
Subjt:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]5.1e-4767.63Show/hide
Query:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI
        ++Y+T ++  STG FSGEKLN  NYFSWSQ ++M LEG+++FGFL G+I  P P D  ER  KGED L R  LINS++P+IGKPLLYATT KD+ DTTQ 
Subjt:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI

Query:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
        LYS RQNAS LYTLRKQVH CKQGT+DVT+YFNKLSL+W
Subjt:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
TYK16957.1 ATP-dependent DNA helicase 2 subunit KU70 [Cucumis melo var. makuwa]5.1e-4767.63Show/hide
Query:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI
        ++Y+T ++  STG FSGEKLN  NYFSWSQ ++M LEG+++FGFL G+I  P P D  ER  KGED L R  LINS++P+IGKPLLYATT KD+ DTTQ 
Subjt:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI

Query:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
        LYS RQNAS LYTLRKQVH CKQGT+DVT+YFNKLSL+W
Subjt:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
TrEMBL top hitse value%identityAlignment
A0A5A7SM64 Beta-galactosidase2.5e-4767.63Show/hide
Query:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI
        ++Y+T ++  STG FSGEKLN  NYFSWSQ ++M LEG+++FGFL G+I  P P D  ER  KGED L R  LINS++P+IGKPLLYATT KD+ DTTQ 
Subjt:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI

Query:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
        LYS RQNAS LYTLRKQVH CKQGT+DVT+YFNKLSL+W
Subjt:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
A0A5A7UGB2 Beta-galactosidase2.5e-4767.63Show/hide
Query:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI
        ++Y+T ++  STG FSGEKLN  NYFSWSQ ++M LEG+++FGFL G+I  P P D  ER  KGED L R  LINS++P+IGKPLLYATT KD+ DTTQ 
Subjt:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI

Query:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
        LYS RQNAS LYTLRKQVH CKQGT+DVT+YFNKLSL+W
Subjt:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
A0A5A7V0Y9 Beta-galactosidase2.5e-4767.63Show/hide
Query:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI
        ++Y+T ++  STG FSGEKLN  NYFSWSQ ++M LEG+++FGFL G+I  P P D  ER  KGED L R  LINS++P+IGKPLLYATT KD+ DTTQ 
Subjt:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI

Query:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
        LYS RQNAS LYTLRKQVH CKQGT+DVT+YFNKLSL+W
Subjt:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
A0A5D3BJK7 Beta-galactosidase2.5e-4767.63Show/hide
Query:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI
        ++Y+T ++  STG FSGEKLN  NYFSWSQ ++M LEG+++FGFL G+I  P P D  ER  KGED L R  LINS++P+IGKPLLYATT KD+ DTTQ 
Subjt:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI

Query:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
        LYS RQNAS LYTLRKQVH CKQGT+DVT+YFNKLSL+W
Subjt:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
A0A5D3C4T4 Beta-galactosidase2.5e-4767.63Show/hide
Query:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI
        ++Y+T ++  STG FSGEKLN  NYFSWSQ ++M LEG+++FGFL G+I  P P D  ER  KGED L R  LINS++P+IGKPLLYATT KD+ DTTQ 
Subjt:  TSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRDTTQI

Query:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
        LYS RQNAS LYTLRKQVH CKQGT+DVT+YFNKLSL+W
Subjt:  LYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).5.4e-1027.27Show/hide
Query:  PNTSYVTNTVTQSTGFFSGEKL--NDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRD
        P++ Y           FS +KL  +++NY +W    R  L    KFGF+ G +P P P  P  +  +  + +  + L+NS+  K+ + ++YA T   + +
Subjt:  PNTSYVTNTVTQSTGFFSGEKL--NDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIKPKIGKPLLYATTTKDIRD

Query:  TTQILYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW
          + ++    +   +Y LR+++   +QG   V  YF KLS +W
Subjt:  TTQILYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAACCTCTTCAGTGGGAGTAGCTCACCAGCAACTGAAGGGGCTTCGACAGCAGATCGCAGCAATTGAGGCTTCATTAGGGGCAACACCCAACACTTCATATGTGAC
TAATACAGTGACACAGTCTACAGGGTTTTTCTCAGGGGAAAAGTTGAACGACAATAACTATTTTTCATGGTCTCAGTTAGTGAGAATGGTCCTTGAAGGGCAGCATAAGT
TTGGTTTTCTGATAGGGAAAATACCTTGTCCTTCGCCTAGAGACCCACAGGAACGGTACTGCAAGGGTGAGGATTTTCTTTTTCGATTCACACTGATCAATAGCATAAAG
CCAAAGATCGGAAAACCTTTACTATACGCTACAACCACTAAGGACATTAGGGACACAACCCAGATACTATATTCCAACCGTCAAAATGCCTCTCACCTATACACATTACG
GAAACAGGTTCATAAGTGCAAGCAAGGGACCATGGATGTTACATCTTATTTTAACAAGCTCTCTCTTATCTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAACCTCTTCAGTGGGAGTAGCTCACCAGCAACTGAAGGGGCTTCGACAGCAGATCGCAGCAATTGAGGCTTCATTAGGGGCAACACCCAACACTTCATATGTGAC
TAATACAGTGACACAGTCTACAGGGTTTTTCTCAGGGGAAAAGTTGAACGACAATAACTATTTTTCATGGTCTCAGTTAGTGAGAATGGTCCTTGAAGGGCAGCATAAGT
TTGGTTTTCTGATAGGGAAAATACCTTGTCCTTCGCCTAGAGACCCACAGGAACGGTACTGCAAGGGTGAGGATTTTCTTTTTCGATTCACACTGATCAATAGCATAAAG
CCAAAGATCGGAAAACCTTTACTATACGCTACAACCACTAAGGACATTAGGGACACAACCCAGATACTATATTCCAACCGTCAAAATGCCTCTCACCTATACACATTACG
GAAACAGGTTCATAAGTGCAAGCAAGGGACCATGGATGTTACATCTTATTTTAACAAGCTCTCTCTTATCTGGTAA
Protein sequenceShow/hide protein sequence
MPTSSVGVAHQQLKGLRQQIAAIEASLGATPNTSYVTNTVTQSTGFFSGEKLNDNNYFSWSQLVRMVLEGQHKFGFLIGKIPCPSPRDPQERYCKGEDFLFRFTLINSIK
PKIGKPLLYATTTKDIRDTTQILYSNRQNASHLYTLRKQVHKCKQGTMDVTSYFNKLSLIW