CuGenDBv2

Gene ID	PI0015213
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Complex 1 LYR protein
Genome location	chr09:21258272..21261133
RNA-Seq Expression	PI0015213
Synteny	PI0015213
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004144434.1 uncharacterized protein LOC101204721 [Cucumis sativus]

2.4e-50

96.36

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Query:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV
        MNSEALQVAKVYRQLLKAVKKH+GKEESKKHFVDYVAQKFRDKSILSKPHS+QQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKR LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV

Query:  GLALPEVYQP
        GL+LPEVYQP
Subjt:  GLALPEVYQP

XP_022933120.1 uncharacterized protein LOC111439884 [Cucurbita moschata]

2.3e-48

93.64

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Query:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV
        MNSEALQVAKVYRQLLKAVKKHIGKEE+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFLLNSVHHQKDLLFSYNIA+DRSDEMKR LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV

Query:  GLALPEVYQP
        GL LPEVYQP
Subjt:  GLALPEVYQP

XP_022967927.1 uncharacterized protein LOC111467294 [Cucurbita maxima]

8.7e-48

92.73

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Query:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV
        MNSEALQVAKVYRQLLKAVK HIGKEE+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFLLNSVHHQKDLLFSYNIA+DRSDEMKR LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV

Query:  GLALPEVYQP
        GL LPEVYQP
Subjt:  GLALPEVYQP

XP_023544932.1 uncharacterized protein LOC111804382 [Cucurbita pepo subsp. pepo]

3.7e-46

90.91

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Query:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV
        MNSEA QVAKVYRQLLKAVK HIGKEE+KKHFVDYVAQKFR+ S +SKPHSVQQ+IKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKR LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV

Query:  GLALPEVYQP
        GL LPEVYQP
Subjt:  GLALPEVYQP

XP_038889144.1 uncharacterized protein LOC120079034 [Benincasa hispida]

1.9e-47

93.64

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Query:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV
        MNSEALQVAKVYRQLLKAVK HIGKEESKKHFVDYVAQKFRDK+ILSKPHSVQQEIKLA DYTFLLNSVHHQKDLLFSYNIAVDRS+EMKR LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV

Query:  GLALPEVYQP
        GL LPE YQP
Subjt:  GLALPEVYQP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9E2 Uncharacterized protein

1.2e-50

96.36

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Query:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV
        MNSEALQVAKVYRQLLKAVKKH+GKEESKKHFVDYVAQKFRDKSILSKPHS+QQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKR LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV

Query:  GLALPEVYQP
        GL+LPEVYQP
Subjt:  GLALPEVYQP

A0A5D3BQE5 Complex1_LYR domain-containing protein

7.0e-43

91.59

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Query:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV
        MNSEALQVAK YRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS     DLLFSYNIAVDRSDEMKR LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV

Query:  GLALPEV
        GL+LPE+
Subjt:  GLALPEV

A0A6J1C0V5 uncharacterized protein LOC111006395

7.0e-43

83.64

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Query:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV
        M+SEALQVA+VYR+LLKAVK HIGKEESKKHFVDYVAQKFR++S LS+PHS+QQ+IKLA DY  LLNSVHHQKDLLFSYNIA+DRS+EMKR LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV

Query:  GLALPEVYQP
        GL LPE YQP
Subjt:  GLALPEVYQP

A0A6J1EY92 uncharacterized protein LOC111439884

1.1e-48

93.64

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Query:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV
        MNSEALQVAKVYRQLLKAVKKHIGKEE+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFLLNSVHHQKDLLFSYNIA+DRSDEMKR LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV

Query:  GLALPEVYQP
        GL LPEVYQP
Subjt:  GLALPEVYQP

A0A6J1HS51 uncharacterized protein LOC111467294

4.2e-48

92.73

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Query:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV
        MNSEALQVAKVYRQLLKAVK HIGKEE+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFLLNSVHHQKDLLFSYNIA+DRSDEMKR LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV

Query:  GLALPEVYQP
        GL LPEVYQP
Subjt:  GLALPEVYQP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G51960.1 CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

6.0e-31

60.91

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Query:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV
        M+ E +  A+VYR LLKAV KH+GKE+ K HF+D+V Q+FR        ++  ++I LAR+YT+LLNS+H  KDLLFSYNIAVDR++EMKR L KSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASV

Query:  GLALPEVYQP
        GL LPEVY+P
Subjt:  GLALPEVYQP

Sequences

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CDS sequence

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ATGAATTCCGAAGCCTTGCAGGTAGCTAAGGTCTATCGCCAGCTTCTCAAAGCTGTAAAGAAACATATTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGC
TCAAAAGTTCAGGGATAAATCCATACTTTCAAAACCCCACTCTGTTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTTAACAGTGTGCACCATCAAAAGG
ACTTGCTGTTCTCGTACAACATTGCTGTTGATCGATCGGATGAAATGAAGCGAAGATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTGCACTTCCTGAGGTTTATCAACCC
TGA

mRNA sequence

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GTTTTTATAAGGAAACAAAATGTAAAACAAACCCTAGCCACCGAAGCTTTCCTTTTTCTTTTTTCTCATTTCTCTTTCCCTTTCACGACATCGATTTTGCTAACCGACAT
CAATTTTGTTCTTCCTCCGGCTACCGACGGCCGACGGCGGCGCGACACTCATTCACCTGCGACGACGAGTCGAGCGACTTTCTGTGCTATGCGTGATTCGAGTCCGTTTG
GATAGTTTCAGTGAGCACATAATGAAATTGTGGAGTTTTTGAGTGACAAGAAGAGGCCCTTGAAGACTTAAAGGTTTGAAAATGAATTCCGAAGCCTTGCAGGTAGCTAA
GGTCTATCGCCAGCTTCTCAAAGCTGTAAAGAAACATATTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGCTCAAAAGTTCAGGGATAAATCCATACTTT
CAAAACCCCACTCTGTTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTTAACAGTGTGCACCATCAAAAGGACTTGCTGTTCTCGTACAACATTGCTGTT
GATCGATCGGATGAAATGAAGCGAAGATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTGCACTTCCTGAGGTTTATCAACCCTGATGCCCTGTGGTTGTTTGATTAAGAAG
AAGCACTTTTTTTCCCGTAAGCAAAGAAGAACAAGCACTTCGATGAGCTGCCAACTTGCCAGCAGACTTACATATTGTTGATTTTTTCTACCTTTTGATGCATCAGTTCT
ATGCGCATTGAAAGAAACGAAGGCGTACACTAACATTTTTATCAAATGGGTGAGATTTTTCCTCTTATTAGTACTCCTGAAGGTGAATTCAAGCATTCTGGTGTGATGTT
TGTTTCATTTCCAATTAATATAAACTTTAATAATGTGAAAAGGAGCTGCTGAATTTTGATGGAAAGCACTTTTACTTTACTTTATTGCAATTGCCCAACTTTCTTAAATA
AATGTTACAACTTGGAAGGCATTGAGTATCAGTGTGGTGGTTTTTAAATATCCCTGATGCTATATGGTTTATTGTTGATTTAATGATCATCATCATTGCAGATTGAAAGT
CGTGGTGAGTAATCGGCAGATAAGGAACTTCAGCTTACTTATAGTTGAGTTATGTTCGGGTTAACACAAAAATTTTCGTGTAAATCTATTTTGACAGATCATGAATGTAT
ATAGAAGGTAAAAAACTTGGATTTTGAAGCTTCTTTTCTGGCATCCATTCTATTACTTACATTCAACAAACACCACATAGAATTTCGCTACATGGGAAAGAGACTCTTCA
GCAATGATGTCTGGTGCTCTTCCATGGATCGATGCACACGAGAAAGCTAATCTATAGTGTGAGTATGAGAGAATAATCTCCCCGAGCATTTGTTATAACTCCTCAATGAA
GAATTTAGTCTTTGTGAGGTCAATAGATGTACTATTTAGAAGCTTAATCATCTTTCAACAATCAGATTTCACTTTGACCGTTCCAGTAGTCAATGGAGGGATGCAAAAAG
AAAGTTTTCAATGGTGGTCATAACTTGATGCAGTTCAAGCTGCATCAAATATTACTCTGAAAAAGTATGTAGTTCGTTTGATACATATGGAAGAAGAGAAGGGGGCATGA
AATTACATATCTTTATCAAGAACAATAAATTGCAATTGCTAAAAGCTCTTTGTTGTGGTTTTGTTTGTAATGCTATATTTTTATTGTACTAGATGTATAAGTAGTTGATA
GGTTTAGATTTTTCCTAACAATCGTAAAGATTGGACAATCGAATTGAACCATCCATCTTTGAGAATATAATTGATACACTAAACAATATTTGTGTTGGCGACTTA

Protein sequence

Show/hide protein sequence

MNSEALQVAKVYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRRLGKSAASVGLALPEVYQP

PI0015213 (gene) of Melon (PI 482460) v1 genome