| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0065060.1 RNA polymerase sigma factor sigC [Cucumis melo var. makuwa] | 2.6e-281 | 96.02 | Show/hide |
Query: SKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHYGIKSTRPSKVEDNFSSRTSLPTGKASPFGILM
+KGREAAFNSGRLSFFS ICEEGESI RETLKTYTCLSEAPQT DLLNLEEIEMNSGAKSLS LHYGIKSTRPSKVEDNFSS TS+PTGKASPFGILM
Subjt: SKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHYGIKSTRPSKVEDNFSSRTSLPTGKASPFGILM
Query: ENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKTNDQNDDVTVYSGKRAGRRSVKKRAMDNADKVA
ENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+EDGEDHNVNQKTNDQN DVTVYSGKRAGRRSVKKRAMDNADKVA
Subjt: ENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKTNDQNDDVTVYSGKRAGRRSVKKRAMDNADKVA
Query: SRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRST
SRPL TRAVKEKIHSSTIFSRKKSSNSSKRRL+VARNEAEMSTG+KVVANLERIRETLEKESGRIASMSCWAEAA VDIKDLQKQLQFGWFC+DELLRST
Subjt: SRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRST
Query: NSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNHGGRRYSDDDIA
NSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLN GGRRYSDDDIA
Subjt: NSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNHGGRRYSDDDIA
Query: RATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSK
RATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFT+D SIQSPEETVKR+LMKKDIFNILQGLESRERQVLVLRYGL DFQPKSLEEIGKLLHVSK
Subjt: RATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSK
Query: EWVRKIEKKAMTKLKNEETVKNLSHYLD
EWVRKIEKKAMTKLKNEETVKNLSHYLD
Subjt: EWVRKIEKKAMTKLKNEETVKNLSHYLD
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| XP_004148429.2 RNA polymerase sigma factor sigC isoform X1 [Cucumis sativus] | 5.2e-290 | 93.39 | Show/hide |
Query: MMGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHY
MMGTSFRPNL+WGFQIQTHSLKNSPSKLSP+ASKGREAAFNSGRLSFFS ICEEGESI RETLKTYTCLSEAPQT A+DLLNLEEIEMNSGAKSL P+HY
Subjt: MMGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHY
Query: GIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKT
GIKSTRPSKVEDNFSS TSLPTGKASPFGILMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHD S LPIE GEDHNVNQKT
Subjt: GIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKT
Query: NDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASM
NDQND+VTVYS K+AGRRSVKKRAMDNADK+ASR L TRAVKEKIH ST+FSRKKSSNSSKRRLIVA NEAEMSTGVKVVANLERIRETLEKESGRIASM
Subjt: NDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASM
Query: SCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWAEAA VDIKDLQKQLQFG FC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFR STYIQYWIRKSMSRVVARNSRGIQ
Subjt: SCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLE
IP SLTKAINQIQKARKVLNH GRRYSDDDIARATGLPLAKVRVASNCLKVVGS DQKMGDG+NMKYMEFT+DMSIQSPEETVKRKLMKKDIFNILQ LE
Subjt: IPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLE
Query: SRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
SRERQVLVLRYGL DF+PKSLEEIGKLLH+SKEWVRKIEKKAMTKLKNEETVK+LSHYLD
Subjt: SRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| XP_008444981.1 PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo] | 1.3e-301 | 96.43 | Show/hide |
Query: MMGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHY
MMGT FRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFS ICEEGESI RETLKTYTCLSEAPQT DLLNLEEIEMNSGAKSLS LHY
Subjt: MMGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHY
Query: GIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKT
GIKSTRPSKVEDNFSS TS+PTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+EDGEDHNVNQKT
Subjt: GIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKT
Query: NDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASM
NDQN DVTVYSGKRAGRRSVKKRAMDNADKVASRPL TRAVKEKIHSSTIFSRKKSSNSSKRRL+VARNEAEMSTG+KVVANLERIRETLEKESGRIASM
Subjt: NDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASM
Query: SCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWAEAA VDIKDLQKQLQFGWFC+DELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Subjt: SCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLE
IPWSLTKAINQIQKARKVLN GGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFT+D SIQSPEETVKRKLMKKDIFNILQGLE
Subjt: IPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLE
Query: SRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
SRERQVLVLRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
Subjt: SRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| XP_022996944.1 RNA polymerase sigma factor sigC-like isoform X2 [Cucurbita maxima] | 1.4e-266 | 86.25 | Show/hide |
Query: MGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHYG
MGTSFRPNLKW FQIQTHS + SPSKLSPYASKGREA+FNSGRLSFFS CEEGE+ISRE LKTYTCLSEAPQTLA LL+LEE E+NSGAKSLS LHYG
Subjt: MGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHYG
Query: IKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGEDHNVNQKT
K++ PSKVEDNF S TSLPTG+ASPF +LMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLPIE G DHNVNQKT
Subjt: IKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGEDHNVNQKT
Query: NDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASM
+DQN ++ VYSGKRAGRRSVK+RAMDNADKVASRPL TRA KEK S SRKK+SNS KRR IVARNEAEMSTGVKVVANLERIRETLEKESGR ASM
Subjt: NDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASM
Query: SCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWA+A+ +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQ
Subjt: SCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLE
IPWSLTKAINQIQKARK LN+ GRRYSDDD+A+ATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME T+D SI+SPE+TVKR+LMKKDIFN+L+ LE
Subjt: IPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLE
Query: SRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
SRERQVLVLRYGL D QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEETV+NLSHYLD
Subjt: SRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| XP_038884658.1 RNA polymerase sigma factor sigC isoform X1 [Benincasa hispida] | 1.9e-284 | 90.25 | Show/hide |
Query: MMGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHY
MMGTSFRPNLKWGFQIQTHS K SPSKL PYASKGREAAFNSGRLSFFS I EEGESISRETLKTYTCLSEAPQT A DLLNLEEIEMN GAKSLSPLHY
Subjt: MMGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHY
Query: GIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPI----EDGEDHNV
GIK+T PSKVEDNFSS TS P+GKASPFG+LMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPI ED DHNV
Subjt: GIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPI----EDGEDHNV
Query: NQKTNDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGR
NQKT D+NDD+ VYSGKRA RRSVKKRAMD+ADKV S+PL TRA KEKIHSS I SRKK+SNS KRRLI+ARNEAEMSTGVKVVANLERIRETLEKESGR
Subjt: NQKTNDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGR
Query: IASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNS
+ SMSCWA AAGVDIKDL+KQLQFGWFCQDELLRSTNSL+LFLA+KYRCSGLPMEDLVQAG+LGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARN+
Subjt: IASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNS
Query: RGIQIPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNIL
RGIQIPWSLTKAINQIQKARKVLN+GGRRYSDDDIA+ATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFT+DMSIQSPEETVK+KLMKKDIFN+L
Subjt: RGIQIPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNIL
Query: QGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
+GLESRERQVLVLRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKL++EETV+N SHYLD
Subjt: QGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0LLW1 Uncharacterized protein | 2.5e-290 | 93.39 | Show/hide |
Query: MMGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHY
MMGTSFRPNL+WGFQIQTHSLKNSPSKLSP+ASKGREAAFNSGRLSFFS ICEEGESI RETLKTYTCLSEAPQT A+DLLNLEEIEMNSGAKSL P+HY
Subjt: MMGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHY
Query: GIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKT
GIKSTRPSKVEDNFSS TSLPTGKASPFGILMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHD S LPIE GEDHNVNQKT
Subjt: GIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKT
Query: NDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASM
NDQND+VTVYS K+AGRRSVKKRAMDNADK+ASR L TRAVKEKIH ST+FSRKKSSNSSKRRLIVA NEAEMSTGVKVVANLERIRETLEKESGRIASM
Subjt: NDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASM
Query: SCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWAEAA VDIKDLQKQLQFG FC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFR STYIQYWIRKSMSRVVARNSRGIQ
Subjt: SCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLE
IP SLTKAINQIQKARKVLNH GRRYSDDDIARATGLPLAKVRVASNCLKVVGS DQKMGDG+NMKYMEFT+DMSIQSPEETVKRKLMKKDIFNILQ LE
Subjt: IPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLE
Query: SRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
SRERQVLVLRYGL DF+PKSLEEIGKLLH+SKEWVRKIEKKAMTKLKNEETVK+LSHYLD
Subjt: SRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| A0A1S3BBM8 RNA polymerase sigma factor sigC | 6.4e-302 | 96.43 | Show/hide |
Query: MMGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHY
MMGT FRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFS ICEEGESI RETLKTYTCLSEAPQT DLLNLEEIEMNSGAKSLS LHY
Subjt: MMGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHY
Query: GIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKT
GIKSTRPSKVEDNFSS TS+PTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+EDGEDHNVNQKT
Subjt: GIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKT
Query: NDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASM
NDQN DVTVYSGKRAGRRSVKKRAMDNADKVASRPL TRAVKEKIHSSTIFSRKKSSNSSKRRL+VARNEAEMSTG+KVVANLERIRETLEKESGRIASM
Subjt: NDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASM
Query: SCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWAEAA VDIKDLQKQLQFGWFC+DELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Subjt: SCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLE
IPWSLTKAINQIQKARKVLN GGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFT+D SIQSPEETVKRKLMKKDIFNILQGLE
Subjt: IPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLE
Query: SRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
SRERQVLVLRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
Subjt: SRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| A0A5A7VCX9 RNA polymerase sigma factor sigC | 1.3e-281 | 96.02 | Show/hide |
Query: SKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHYGIKSTRPSKVEDNFSSRTSLPTGKASPFGILM
+KGREAAFNSGRLSFFS ICEEGESI RETLKTYTCLSEAPQT DLLNLEEIEMNSGAKSLS LHYGIKSTRPSKVEDNFSS TS+PTGKASPFGILM
Subjt: SKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHYGIKSTRPSKVEDNFSSRTSLPTGKASPFGILM
Query: ENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKTNDQNDDVTVYSGKRAGRRSVKKRAMDNADKVA
ENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+EDGEDHNVNQKTNDQN DVTVYSGKRAGRRSVKKRAMDNADKVA
Subjt: ENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKTNDQNDDVTVYSGKRAGRRSVKKRAMDNADKVA
Query: SRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRST
SRPL TRAVKEKIHSSTIFSRKKSSNSSKRRL+VARNEAEMSTG+KVVANLERIRETLEKESGRIASMSCWAEAA VDIKDLQKQLQFGWFC+DELLRST
Subjt: SRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRST
Query: NSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNHGGRRYSDDDIA
NSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLN GGRRYSDDDIA
Subjt: NSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNHGGRRYSDDDIA
Query: RATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSK
RATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFT+D SIQSPEETVKR+LMKKDIFNILQGLESRERQVLVLRYGL DFQPKSLEEIGKLLHVSK
Subjt: RATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSK
Query: EWVRKIEKKAMTKLKNEETVKNLSHYLD
EWVRKIEKKAMTKLKNEETVKNLSHYLD
Subjt: EWVRKIEKKAMTKLKNEETVKNLSHYLD
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| A0A6J1KA34 RNA polymerase sigma factor sigC-like isoform X2 | 6.7e-267 | 86.25 | Show/hide |
Query: MGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHYG
MGTSFRPNLKW FQIQTHS + SPSKLSPYASKGREA+FNSGRLSFFS CEEGE+ISRE LKTYTCLSEAPQTLA LL+LEE E+NSGAKSLS LHYG
Subjt: MGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLEEIEMNSGAKSLSPLHYG
Query: IKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGEDHNVNQKT
K++ PSKVEDNF S TSLPTG+ASPF +LMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLPIE G DHNVNQKT
Subjt: IKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGEDHNVNQKT
Query: NDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASM
+DQN ++ VYSGKRAGRRSVK+RAMDNADKVASRPL TRA KEK S SRKK+SNS KRR IVARNEAEMSTGVKVVANLERIRETLEKESGR ASM
Subjt: NDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASM
Query: SCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWA+A+ +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQ
Subjt: SCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLE
IPWSLTKAINQIQKARK LN+ GRRYSDDD+A+ATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME T+D SI+SPE+TVKR+LMKKDIFN+L+ LE
Subjt: IPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLE
Query: SRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
SRERQVLVLRYGL D QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEETV+NLSHYLD
Subjt: SRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| A0A6J1KCF5 RNA polymerase sigma factor sigC-like isoform X1 | 4.3e-266 | 85.94 | Show/hide |
Query: MGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLE--EIEMNSGAKSLSPLH
MGTSFRPNLKW FQIQTHS + SPSKLSPYASKGREA+FNSGRLSFFS CEEGE+ISRE LKTYTCLSEAPQTLA LL+LE E+E+NSGAKSLS LH
Subjt: MGTSFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDLLNLE--EIEMNSGAKSLSPLH
Query: YGIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGEDHNVNQ
YG K++ PSKVEDNF S TSLPTG+ASPF +LMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLPIE G DHNVNQ
Subjt: YGIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGEDHNVNQ
Query: KTNDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIA
KT+DQN ++ VYSGKRAGRRSVK+RAMDNADKVASRPL TRA KEK S SRKK+SNS KRR IVARNEAEMSTGVKVVANLERIRETLEKESGR A
Subjt: KTNDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIA
Query: SMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
SMSCWA+A+ +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRG
Subjt: SMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
Query: IQIPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQG
IQIPWSLTKAINQIQKARK LN+ GRRYSDDD+A+ATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME T+D SI+SPE+TVKR+LMKKDIFN+L+
Subjt: IQIPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQG
Query: LESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
LESRERQVLVLRYGL D QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEETV+NLSHYLD
Subjt: LESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 5.1e-54 | 32.23 | Show/hide |
Query: TLKTSSFHDLSDLPIEDGEDHNVNQKTNDQNDDVTVYSGKRAGRRSVKKRAMDN------ADKVASRPLITRAVKEKI-HSSTIFSRKKSSNSSKRRLIV
T S+ + DL E E+ V + + V S ++ R++ + + ++ + K S P R V +++ H+ + + +++SSK L+
Subjt: TLKTSSFHDLSDLPIEDGEDHNVNQKTNDQNDDVTVYSGKRAGRRSVKKRAMDN------ADKVASRPLITRAVKEKI-HSSTIFSRKKSSNSSKRRLIV
Query: ARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVE
R E E+S G++ + LER++ L + SGR + + WA AAGVD K L++++ G C+D++++S LV+ +AK Y+ +G+ ++DLVQ G G+++G E
Subjt: ARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVE
Query: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL-NHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNM
+FD +GF+FSTY +WI++++ + ++ SR I++P+ + +A ++++ARK L + G+ +++IA ATGL + ++ K S+DQK+G N+
Subjt: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL-NHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNM
Query: KYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
K E +D + E+ + ++ M++D+ +L L +RE+QV+ R+G+ D + K+L+EIG+++ VS+E VR+IE A KLKN++ +L YL
Subjt: KYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
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| O24621 RNA polymerase sigma factor sigC | 2.6e-114 | 45.82 | Show/hide |
Query: RLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDL-LNLEEIEMNSGAKSLSPLHYGIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETF
R SF S + EE ++LK C S +P T +++ + L++ + N G S E ++SSR+ L + +L +NL LEETF
Subjt: RLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDL-LNLEEIEMNSGAKSLSPLHYGIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETF
Query: AESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKTNDQNDDVTVYSGKRAGRRSVKKRA------MDNADKVASRPL
+ +ERDI+LQ+ KLGA E F TCLSR +S LSD N V V S RR VKK+A +N D+ +S P+
Subjt: AESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKTNDQNDDVTVYSGKRAGRRSVKKRA------MDNADKVASRPL
Query: ITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLV
R I + ++ K+R ++RNE EMSTGVK+VA++ERIR LE+ESG++AS+SCWA AAG++ K L + L +GW+C+DEL++ST SLV
Subjt: ITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLV
Query: LFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL--NHGGRRYSDDDIARA
LFLA+ YR G+ EDL+QAG +GVLQG ERFD RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARK L +HG + +D++IA+
Subjt: LFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL--NHGGRRYSDDDIARA
Query: TGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEW
TG + K+R A+ CLKVVGS+D+K+GD K++EFT D +++SPEE V R+ ++DI ++L+GLE RE+QV+VLRYGL D++PKSLEEIGKLL VSKEW
Subjt: TGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEW
Query: VRKIEKKAMTKLKNEETVKNLSHYLD
+RKIE++AM KL+++ ++L +YL+
Subjt: VRKIEKKAMTKLKNEETVKNLSHYLD
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| P26683 RNA polymerase sigma factor SigA | 7.4e-45 | 31.17 | Show/hide |
Query: DLSDLPIEDGE------DHNVNQKTNDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMST
+L DL IE+ E D ++++ Q D+ SGK A R R +K H + R + RL+ A E E++
Subjt: DLSDLPIEDGE------DHNVNQKTNDQNDDVTVYSGKRAGRRSVKKRAMDNADKVASRPLITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMST
Query: GVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFR
+ + LER+RE L ++ R S WAEA + + + +L G +D++++S LV+ +AKKY GL +DL+Q G+LG+++ E+FD ++G++
Subjt: GVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFR
Query: FSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNHG-GRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDM
FSTY +WIR++++R +A SR I++P L + I++I+K K+L+ GR+ ++++IA + + K+R + ++ S++ +G + + +F +
Subjt: FSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNHG-GRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDM
Query: SIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
++PE+ V + L+++D+ +L L RER VL LRYGL D + K+LEEIG++ +V++E +R+IE KA+ KL++ L Y+
Subjt: SIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
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| P38023 RNA polymerase sigma factor SigA1 | 8.1e-44 | 32.15 | Show/hide |
Query: AMDNADKVASRPLITRAVKEKIHSSTIFS--RKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFG
A+D+ D V K K+ + R + RL+ A E E++ + + LERIR+ L ++ R+ S + WA A + + +++L G
Subjt: AMDNADKVASRPLITRAVKEKIHSSTIFS--RKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFG
Query: WFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNH
+D++++S LV+ +AKKY GL +DL+Q G+LG+++ E+FD ++G++FSTY +WIR++++R +A SR I++P L + I++I+K K+L+
Subjt: WFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNH
Query: G-GRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKS
GR+ ++++IA + + K+R + ++ S++ +G + + +F + ++PE+ V + L+++D+ +L L RER VL LRYGL D + K+
Subjt: G-GRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKS
Query: LEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
LEEIG+L +V++E +R+IE KA+ KL++ L Y+
Subjt: LEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 7.6e-42 | 30.67 | Show/hide |
Query: RRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGV
++L+ A+ EAE+ + ++ + LE+++ LE ++G ++ WAEA G+ L+ + G +++L+ + LV+ +AK+Y+ GL +DL+Q G++G+
Subjt: RRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGV
Query: LQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKV-LNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMG
++ VE+F P+ G RF+TY +WIR+S+ + + +NSR I++P ++ + ++ +ARK + G R S +++A G+ K+ + S+ Q +
Subjt: LQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKV-LNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMG
Query: DGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
+ + E T D I++P +V ++LM+ + N+L L +ER+++ LR+G+ + +SL EIG++ +SKE VR++E +A+ +LK L Y D
Subjt: DGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 3.6e-55 | 32.23 | Show/hide |
Query: TLKTSSFHDLSDLPIEDGEDHNVNQKTNDQNDDVTVYSGKRAGRRSVKKRAMDN------ADKVASRPLITRAVKEKI-HSSTIFSRKKSSNSSKRRLIV
T S+ + DL E E+ V + + V S ++ R++ + + ++ + K S P R V +++ H+ + + +++SSK L+
Subjt: TLKTSSFHDLSDLPIEDGEDHNVNQKTNDQNDDVTVYSGKRAGRRSVKKRAMDN------ADKVASRPLITRAVKEKI-HSSTIFSRKKSSNSSKRRLIV
Query: ARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVE
R E E+S G++ + LER++ L + SGR + + WA AAGVD K L++++ G C+D++++S LV+ +AK Y+ +G+ ++DLVQ G G+++G E
Subjt: ARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVE
Query: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL-NHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNM
+FD +GF+FSTY +WI++++ + ++ SR I++P+ + +A ++++ARK L + G+ +++IA ATGL + ++ K S+DQK+G N+
Subjt: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL-NHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNM
Query: KYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
K E +D + E+ + ++ M++D+ +L L +RE+QV+ R+G+ D + K+L+EIG+++ VS+E VR+IE A KLKN++ +L YL
Subjt: KYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
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| AT1G64860.1 sigma factor A | 7.1e-27 | 29.41 | Show/hide |
Query: VARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGV
V R ++ +G+++ + R+++ L G S A + + +LQ L +++L S LV+ +A++Y G M DLVQ G +G+L+G+
Subjt: VARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGV
Query: ERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLN-
E+FD +GFR STY+ +WIR+ +SR + NSR +++P L + + I+ A+ L G S D IA + + KVR A+ + V S+D+ LN
Subjt: ERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLN-
Query: ---MKYMEFTSDMSIQ-SPEETVKRKLMKKDIFNILQG-LESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKN
+ + +D ++ +P +K+++ ++ L RE++++ L YGL D + + E+I K + +S+E VR++ A+ KLK+
Subjt: ---MKYMEFTSDMSIQ-SPEETVKRKLMKKDIFNILQG-LESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKN
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| AT2G36990.1 RNApolymerase sigma-subunit F | 5.4e-43 | 30.67 | Show/hide |
Query: RRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGV
++L+ A+ EAE+ + ++ + LE+++ LE ++G ++ WAEA G+ L+ + G +++L+ + LV+ +AK+Y+ GL +DL+Q G++G+
Subjt: RRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGV
Query: LQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKV-LNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMG
++ VE+F P+ G RF+TY +WIR+S+ + + +NSR I++P ++ + ++ +ARK + G R S +++A G+ K+ + S+ Q +
Subjt: LQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKV-LNHGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMG
Query: DGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
+ + E T D I++P +V ++LM+ + N+L L +ER+++ LR+G+ + +SL EIG++ +SKE VR++E +A+ +LK L Y D
Subjt: DGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| AT3G53920.1 RNApolymerase sigma-subunit C | 1.8e-115 | 45.82 | Show/hide |
Query: RLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDL-LNLEEIEMNSGAKSLSPLHYGIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETF
R SF S + EE ++LK C S +P T +++ + L++ + N G S E ++SSR+ L + +L +NL LEETF
Subjt: RLSFFSIICEEGESISRETLKTYTCLSEAPQTLASDL-LNLEEIEMNSGAKSLSPLHYGIKSTRPSKVEDNFSSRTSLPTGKASPFGILMENLDVLEETF
Query: AESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKTNDQNDDVTVYSGKRAGRRSVKKRA------MDNADKVASRPL
+ +ERDI+LQ+ KLGA E F TCLSR +S LSD N V V S RR VKK+A +N D+ +S P+
Subjt: AESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGEDHNVNQKTNDQNDDVTVYSGKRAGRRSVKKRA------MDNADKVASRPL
Query: ITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLV
R I + ++ K+R ++RNE EMSTGVK+VA++ERIR LE+ESG++AS+SCWA AAG++ K L + L +GW+C+DEL++ST SLV
Subjt: ITRAVKEKIHSSTIFSRKKSSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAAGVDIKDLQKQLQFGWFCQDELLRSTNSLV
Query: LFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL--NHGGRRYSDDDIARA
LFLA+ YR G+ EDL+QAG +GVLQG ERFD RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARK L +HG + +D++IA+
Subjt: LFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL--NHGGRRYSDDDIARA
Query: TGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEW
TG + K+R A+ CLKVVGS+D+K+GD K++EFT D +++SPEE V R+ ++DI ++L+GLE RE+QV+VLRYGL D++PKSLEEIGKLL VSKEW
Subjt: TGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEEIGKLLHVSKEW
Query: VRKIEKKAMTKLKNEETVKNLSHYLD
+RKIE++AM KL+++ ++L +YL+
Subjt: VRKIEKKAMTKLKNEETVKNLSHYLD
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| AT5G13730.1 sigma factor 4 | 3.2e-35 | 36.6 | Show/hide |
Query: QDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNHGGR
++++ R LV+ +A Y+ GL ++DL+Q G++G+L+G ERFDP RG++ STY+ +WI++++ R +A SR +++P S+ + ++ +A VL R
Subjt: QDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNHGGR
Query: RY-SDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEE
R S ++IA L ++ VR+A + S+D+ M E PEE VKR+ MK +I +L L +RE +VL L +GL P S EE
Subjt: RY-SDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTSDMSIQSPEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLTDFQPKSLEE
Query: IGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHY
IGK L +S+E VR+I A+ KL+N V +L Y
Subjt: IGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHY
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