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PI0015403 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0015403
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:24311639..24312843
RNA-Seq ExpressionPI0015403
SyntenyPI0015403
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.4e-1368.89Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+G
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
KAA0056553.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.7e-1358.49Show/hide
Query:  MAPLPGSFGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
        MA    SFG  +K+ KCGVCGL+GHPNDKCP+++ + N++R+Y+P GNTYN+G
Subjt:  MAPLPGSFGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
KAA0058350.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.5e-1371.43Show/hide
Query:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
        +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN G
Subjt:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
TYK19600.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.4e-1368.89Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+G
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]9.8e-1366.67Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+G
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
TrEMBL top hitse value%identityAlignment
A0A5D3BX36 Retrotransposon gag protein2.8e-1358.49Show/hide
Query:  MAPLPGSFGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
        MA    SFG  +K+ KCGVCGL+GHPNDKCP+++ + N++R+Y+P GNTYN+G
Subjt:  MAPLPGSFGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
A0A5D3CRR8 Retrotransposon gag protein1.6e-1368.89Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+G
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
A0A5D3D815 Retrotransposon gag protein2.1e-1368.89Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+G
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
A0A5D3DCG3 Retrotransposon gag protein4.7e-1366.67Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+G
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
A0A5D3DFM6 Retrotransposon gag protein3.6e-1371.43Show/hide
Query:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
        +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN G
Subjt:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCTTCGGCGGAAATGTAAAAGTTGCCAAATGTGGAGTTTGCGGATTAATAGGACATCCTAATGACAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGTCATTAGGAAGTATGATCCTCAAGGAAATACTTACAATGCCGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCTTCGGCGGAAATGTAAAAGTTGCCAAATGTGGAGTTTGCGGATTAATAGGACATCCTAATGACAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGTCATTAGGAAGTATGATCCTCAAGGAAATACTTACAATGCCGGTTGA
Protein sequenceShow/hide protein sequence
MAPLPGSFGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG