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PI0015406 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0015406
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr08:2993842..2995554
RNA-Seq ExpressionPI0015406
SyntenyPI0015406
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040414.1 uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]5.3e-3969.17Show/hide
Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE
        MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ +VGRL +NF+ELVQENAEIT+VAKE++ED+ R+F++EL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE

Query:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
        +AS    LK+ +EGE  N        +TR DAL
Subjt:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
KAA0040659.1 uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa]7.6e-3868.42Show/hide
Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE
        MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ +VGRL + F+ELVQENAEIT+VAKE++ED+ R+F+KEL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE

Query:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
        +AS    LK+ +EGE  +        +TR DAL
Subjt:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
KAA0065760.1 polyprotein [Cucumis melo var. makuwa]1.5e-3868.42Show/hide
Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE
        MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ +VGRL +NF+ELVQENAEIT+VAKE++ED+ R+F++EL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE

Query:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
        + S    LK+ +EGE  N        +TR DAL
Subjt:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
TYK02748.1 uncharacterized protein E5676_scaffold145G00020 [Cucumis melo var. makuwa]1.7e-3768.42Show/hide
Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE
        MS EE H SP EQVIEGPVTRGRKEQHS TRRSKSKGPA REHV+TRLTNLEQG+E+VQ +VGRL DNF+ELVQENAEIT+VAKE++ED+ R+F+KEL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE

Query:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
        +AS    LK+ +EGE  +        +TR DAL
Subjt:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
XP_008446938.1 PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo]1.2e-3869.17Show/hide
Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE
        MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ +VGRL +NF+ELV ENAEIT+VAKE++ED+ R+F+KEL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE

Query:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
        +AS    LK+ +EGE  N        +TR DAL
Subjt:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
TrEMBL top hitse value%identityAlignment
A0A1S3BG92 uncharacterized protein LOC1034894995.7e-3969.17Show/hide
Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE
        MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ +VGRL +NF+ELV ENAEIT+VAKE++ED+ R+F+KEL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE

Query:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
        +AS    LK+ +EGE  N        +TR DAL
Subjt:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
A0A5A7TAA5 Uncharacterized protein2.6e-3969.17Show/hide
Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE
        MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ +VGRL +NF+ELVQENAEIT+VAKE++ED+ R+F++EL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE

Query:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
        +AS    LK+ +EGE  N        +TR DAL
Subjt:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
A0A5A7THC0 Reverse transcriptase domain-containing protein3.7e-3868.42Show/hide
Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE
        MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ +VGRL + F+ELVQENAEIT+VAKE++ED+ R+F+KEL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE

Query:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
        +AS    LK+ +EGE  +        +TR DAL
Subjt:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
A0A5A7VEX8 Polyprotein7.4e-3968.42Show/hide
Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE
        MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ +VGRL +NF+ELVQENAEIT+VAKE++ED+ R+F++EL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE

Query:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
        + S    LK+ +EGE  N        +TR DAL
Subjt:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
A0A5D3BUU0 Integrase catalytic domain-containing protein8.2e-3868.42Show/hide
Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE
        MS EE H SP EQVIEGPVTRGRKEQHS TRRSKSKGPA REHV+TRLTNLEQG+E+VQ +VGRL DNF+ELVQENAEIT+VAKE++ED+ R+F+KEL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNE

Query:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
        +AS    LK+ +EGE  +        +TR DAL
Subjt:  VAS---ALKSLIEGEWGNDDGTVEEGKTRCDAL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACAGAGGAAAGACACGTATCACCCGAAGAACAAGTCATCGAAGGACCCGTTACTCGGGGTAGGAAAGAACAACATTCTCCAACCCGACGCTCGAAGTCTAAGGG
ACCGGCTGCGAGAGAGCATGTCGACACCCGCCTTACCAACCTCGAGCAAGGCTTGGAGGAGGTTCAATTCTCGGTTGGTAGGCTGGGTGATAATTTTGACGAATTGGTCC
AGGAGAATGCCGAGATCACGACTGTTGCGAAAGAACTCGTTGAGGATCTGGTACGATCATTTAGGAAGGAACTGAACGAAGTGGCATCGGCATTAAAATCTCTCATCGAA
GGTGAATGGGGGAATGACGATGGTACCGTTGAAGAAGGGAAAACCCGCTGTGATGCTCTCAGCCACACAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTACAGAGGAAAGACACGTATCACCCGAAGAACAAGTCATCGAAGGACCCGTTACTCGGGGTAGGAAAGAACAACATTCTCCAACCCGACGCTCGAAGTCTAAGGG
ACCGGCTGCGAGAGAGCATGTCGACACCCGCCTTACCAACCTCGAGCAAGGCTTGGAGGAGGTTCAATTCTCGGTTGGTAGGCTGGGTGATAATTTTGACGAATTGGTCC
AGGAGAATGCCGAGATCACGACTGTTGCGAAAGAACTCGTTGAGGATCTGGTACGATCATTTAGGAAGGAACTGAACGAAGTGGCATCGGCATTAAAATCTCTCATCGAA
GGTGAATGGGGGAATGACGATGGTACCGTTGAAGAAGGGAAAACCCGCTGTGATGCTCTCAGCCACACAGCTTAA
Protein sequenceShow/hide protein sequence
MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNEVASALKSLIE
GEWGNDDGTVEEGKTRCDALSHTA