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PI0015473 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0015473
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr09:17869229..17869890
RNA-Seq ExpressionPI0015473
SyntenyPI0015473
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053200.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.6e-1943.2Show/hide
Query:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSNLQTNNFSTGDDQSSSLP
        N  + +N NS  +R DD  Y  KK+ D   F CRECGG GHYQ+EC T+ R+Q+K F  TLSDE     DS D+   + A++ ++  + +T DD   S+ 
Subjt:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSNLQTNNFSTGDDQSSSLP

Query:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS
          + E ++EK    W+ED +    QKERI +L+E+N RL+  IS +K +LR  +NEND++ KS +MLNS
Subjt:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS

TYJ98791.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.4e-2040.7Show/hide
Query:  NQHKFRNGNSFPKRKDDRN------YAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRAL-VAYSNLQTNNFSTGD
        NQ++ RN +S  KR ++ +      Y  KK+ D   F CRECGG  HYQ+EC T+LR+Q+  F  TLSDES    D +  + A  +  ++  TN+ S   
Subjt:  NQHKFRNGNSFPKRKDDRN------YAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRAL-VAYSNLQTNNFSTGD

Query:  DQSSSLPGGDLEDIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS
        ++S S     +E +   W+ED +    QKERI +L+E+N  L+  IS +K E+R  +NEND++ KSV+MLNS
Subjt:  DQSSSLPGGDLEDIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS

TYK00141.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.6e-1943.2Show/hide
Query:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSNLQTNNFSTGDDQSSSLP
        N  + +N NS  +R DD  Y  KK+ D   F CRECGG GHYQ+EC T+ R+Q+K F  TLSDE     DS D+   + A++ ++  + +T DD   S+ 
Subjt:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSNLQTNNFSTGDDQSSSLP

Query:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS
          + E ++EK    W+ED +    QKERI +L+E+N RL+  IS +K +LR  +NEND++ KS +MLNS
Subjt:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS

TYK02457.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]3.5e-1946.04Show/hide
Query:  FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSNLQTNNFSTGDDQSSSLPGGDLEDIMEK----WQEDLKVIEQQKERIL
        F CRECGG GHYQ+EC TYLR+Q+K F  TLSD  E S DS D+ R + A++ ++  + ++ DD   S    + +  +EK    W+ED +    QKERI 
Subjt:  FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSNLQTNNFSTGDDQSSSLPGGDLEDIMEK----WQEDLKVIEQQKERIL

Query:  ELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS
        +L+++N  L+  IS IK +LR  +NEND++ KSV+MLNS
Subjt:  ELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS

TYK19884.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.9e-1836.52Show/hide
Query:  GSTSNWDNQHKFRNGNSFPKRKDDRN------YAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSD-ESESSHDSEDEVRALVAYSNLQT
        G  +   N+++ RN N   +R ++ +      Y  KK+ D   F C+ECGG GHYQ EC T+LR+Q+K F  TL D ES  S D +  + A       + 
Subjt:  GSTSNWDNQHKFRNGNSFPKRKDDRN------YAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSD-ESESSHDSEDEVRALVAYSNLQT

Query:  NNFSTGDDQSSSLPGGDLEDIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLN
         ++ +G  + S      +E +   W+ED +    Q+E I +L+E+N RL+  IS +K +LR  +NEND++ KSV+MLN
Subjt:  NNFSTGDDQSSSLPGGDLEDIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLN

TrEMBL top hitse value%identityAlignment
A0A5A7UDB5 Gag-pol polyprotein7.6e-2043.2Show/hide
Query:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSNLQTNNFSTGDDQSSSLP
        N  + +N NS  +R DD  Y  KK+ D   F CRECGG GHYQ+EC T+ R+Q+K F  TLSDE     DS D+   + A++ ++  + +T DD   S+ 
Subjt:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSNLQTNNFSTGDDQSSSLP

Query:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS
          + E ++EK    W+ED +    QKERI +L+E+N RL+  IS +K +LR  +NEND++ KS +MLNS
Subjt:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS

A0A5A7V3Q5 Gag-pol polyprotein, related1.9e-1840.62Show/hide
Query:  RNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSNLQTNNFSTGDDQSSSLPGGDLE
        RN  +F +R D   Y  KK+ D   F CRECGG GHYQ+EC T+LR Q+K F  TLSDE   S + E  +  L A                         
Subjt:  RNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSNLQTNNFSTGDDQSSSLPGGDLE

Query:  DIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS
             W+ED +  E QKE+I +L+E+N R +  IS +K +LR  +NEND++ KSV+MLNS
Subjt:  DIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS

A0A5D3BJA9 Gag-pol polyprotein1.2e-2040.7Show/hide
Query:  NQHKFRNGNSFPKRKDDRN------YAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRAL-VAYSNLQTNNFSTGD
        NQ++ RN +S  KR ++ +      Y  KK+ D   F CRECGG  HYQ+EC T+LR+Q+  F  TLSDES    D +  + A  +  ++  TN+ S   
Subjt:  NQHKFRNGNSFPKRKDDRN------YAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRAL-VAYSNLQTNNFSTGD

Query:  DQSSSLPGGDLEDIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS
        ++S S     +E +   W+ED +    QKERI +L+E+N  L+  IS +K E+R  +NEND++ KSV+MLNS
Subjt:  DQSSSLPGGDLEDIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS

A0A5D3BJZ7 Gag-pol polyprotein7.6e-2043.2Show/hide
Query:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSNLQTNNFSTGDDQSSSLP
        N  + +N NS  +R DD  Y  KK+ D   F CRECGG GHYQ+EC T+ R+Q+K F  TLSDE     DS D+   + A++ ++  + +T DD   S+ 
Subjt:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSNLQTNNFSTGDDQSSSLP

Query:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS
          + E ++EK    W+ED +    QKERI +L+E+N RL+  IS +K +LR  +NEND++ KS +MLNS
Subjt:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS

A0A5D3BSP9 Gag-proteinase polyprotein1.7e-1946.04Show/hide
Query:  FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSNLQTNNFSTGDDQSSSLPGGDLEDIMEK----WQEDLKVIEQQKERIL
        F CRECGG GHYQ+EC TYLR+Q+K F  TLSD  E S DS D+ R + A++ ++  + ++ DD   S    + +  +EK    W+ED +    QKERI 
Subjt:  FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSNLQTNNFSTGDDQSSSLPGGDLEDIMEK----WQEDLKVIEQQKERIL

Query:  ELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS
        +L+++N  L+  IS IK +LR  +NEND++ KSV+MLNS
Subjt:  ELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTATGGATCCACTTCAAATTGGGATAATCAACATAAATTTAGAAATGGTAACTCTTTTCCGAAAAGAAAAGATGACAGAAATTATGCTTTTAAAAAGGATGAAGA
TTTCATATGCAGAGAATGTGGTGGTAAAGGTCATTACCAATCAGAATGTGCTACCTATTTGAGAAGACAGCGCAAAGGATTCTCAGCAACTCTGTCTGATGAATCAGAAT
CAAGTCATGATTCTGAGGATGAGGTACGTGCACTAGTTGCTTATTCTAATTTACAAACTAATAATTTTTCGACAGGAGATGATCAATCCTCTAGTCTTCCTGGAGGAGAT
CTTGAAGATATCATGGAGAAATGGCAGGAAGATCTCAAAGTTATTGAACAGCAGAAAGAAAGAATTTTAGAACTAGTTGAAGACAACCATAGACTGTTGCAAACTATCTC
AGATATCAAGAAGGAGTTAAGAATTGCAAAAAATGAAAATGATAGAATGTCAAAATCTGTTCGCATGCTGAACTCAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACTATGGATCCACTTCAAATTGGGATAATCAACATAAATTTAGAAATGGTAACTCTTTTCCGAAAAGAAAAGATGACAGAAATTATGCTTTTAAAAAGGATGAAGA
TTTCATATGCAGAGAATGTGGTGGTAAAGGTCATTACCAATCAGAATGTGCTACCTATTTGAGAAGACAGCGCAAAGGATTCTCAGCAACTCTGTCTGATGAATCAGAAT
CAAGTCATGATTCTGAGGATGAGGTACGTGCACTAGTTGCTTATTCTAATTTACAAACTAATAATTTTTCGACAGGAGATGATCAATCCTCTAGTCTTCCTGGAGGAGAT
CTTGAAGATATCATGGAGAAATGGCAGGAAGATCTCAAAGTTATTGAACAGCAGAAAGAAAGAATTTTAGAACTAGTTGAAGACAACCATAGACTGTTGCAAACTATCTC
AGATATCAAGAAGGAGTTAAGAATTGCAAAAAATGAAAATGATAGAATGTCAAAATCTGTTCGCATGCTGAACTCAGCTTGA
Protein sequenceShow/hide protein sequence
MNYGSTSNWDNQHKFRNGNSFPKRKDDRNYAFKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSNLQTNNFSTGDDQSSSLPGGD
LEDIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENDRMSKSVRMLNSA