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PI0015587 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0015587
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr10:5935287..5935742
RNA-Seq ExpressionPI0015587
SyntenyPI0015587
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040193.1 gag/pol protein [Cucumis melo var. makuwa]5.4e-5674.83Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG NY TWKS LNMILVI DLR +LME+CPP P +NASQ+V+DAYD WTK N+KAR+YIL  M D+LSKKHE MVTARQIMDS++E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE
        MFGQPSIQI+ EAIKYVYN  MKE QSVREHVLDM+V FN+AE N  V DE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-6180.13Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LA +SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N A+ DE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE

TYK00843.1 gag/pol protein [Cucumis melo var. makuwa]5.7e-5878.81Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK E LTG+NYA WKS LNMILVI DLRF+LMEECPP P +NAS+++RDAY+R TKAN+KA +YILA MSD+LSKKHE MVTARQIMDS +E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE
        +F QPSIQI+ EAIKYVYNA MKEGQSVREH LDM+V FNVAE NGAVIDE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-6180.13Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LA +SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N A+ DE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE

XP_038882358.1 uncharacterized protein LOC120073622 [Benincasa hispida]7.0e-5671.52Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE
        M+SSII LL +EKL GDNY+ WKSNLN ILV+DDLRFVL EECP +P  NA++TVR+AYDRW KAN KAR+YILA MSDVL+KKHES+ TA++I+DSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE
        +FGQPS  +RHEAIK++Y  RMKEG SVREHVLDMM+ FN+AE NG  IDE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE

TrEMBL top hitse value%identityAlignment
A0A5A7VA67 Gag/pol protein2.7e-6180.13Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LA +SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N A+ DE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE

A0A5D3BM47 Gag/pol protein2.8e-5878.81Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK E LTG+NYA WKS LNMILVI DLRF+LMEECPP P +NAS+++RDAY+R TKAN+KA +YILA MSD+LSKKHE MVTARQIMDS +E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE
        +F QPSIQI+ EAIKYVYNA MKEGQSVREH LDM+V FNVAE NGAVIDE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE

A0A5D3D0D9 Gag/pol protein2.7e-6180.13Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LA +SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N A+ DE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE

A0A5D3DQJ2 Gag/pol protein2.6e-5674.83Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG NY TWKS LNMILVI DLR +LME+CPP P +NASQ+V+DAYD WTK N+KAR+YIL  M D+LSKKHE MVTARQIMDS++E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE
        MFGQPSIQI+ EAIKYVYN  MKE QSVREHVLDM+V FN+AE N  V DE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE

A0A6J1DWL0 uncharacterized protein LOC1110247341.3e-5572.19Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE
        MS+SIIALL  +KL G+NY  WKSNLN ILVIDDLRFVL E+CP +PV NA+  VR+AYDRW K+N+KA+VYILA +SDVL+KKHE  VT ++IMDSLQ 
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE
        MFGQPS+Q RHEA+K+VYN+RMKEG SVREHVL++MV FNVAE+NG VIDE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTT
CGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACTGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATAACAAGGCCCGAGTCTACATCT
TGGCCATTATGTCTGACGTACTAAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCATCCATTCAAATCCGG
CACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGC
GGTCATTGACGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTT
CGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACTGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATAACAAGGCCCGAGTCTACATCT
TGGCCATTATGTCTGACGTACTAAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCATCCATTCAAATCCGG
CACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGC
GGTCATTGACGAGTAG
Protein sequenceShow/hide protein sequence
MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANNKARVYILAIMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIR
HEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDE