; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0015599 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0015599
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr02:13179813..13180814
RNA-Seq ExpressionPI0015599
SyntenyPI0015599
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.0e-4058.06Show/hide
Query:  EETIDNIPQDHLDN----QEPYLENPNLDRQTM-----GQVREKTLRELSEPDEDQRPLCINFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGS
        +E   + P  H+ +    Q  Y +  + DR T+     G + +K   E  E          +F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  
Subjt:  EETIDNIPQDHLDN----QEPYLENPNLDRQTM-----GQVREKTLRELSEPDEDQRPLCINFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGS

Query:  VKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN
        +KV KCGVC LVGHPNDKCP+++E+ N++RKYDPH NTYN+GWRDNPNLRWGNDN
Subjt:  VKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN

KAA0050529.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.0e-4082.98Show/hide
Query:  NFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN
        +FGNRASELDNSLTKEVSELKSQM NMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDPH NTYN GWRDNPNLRWGNDN
Subjt:  NFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN

KAA0061315.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.6e-4759.09Show/hide
Query:  EETIDNIP-QDHLDNQEPYLE---NPNLDRQTMGQVREKTLRELSEPDEDQRPLCI--------------------------NFGNRASELDNSLTKEVS
        E +I N+  Q+ L   EP L+   +PNL R+ MG+VREKTL+EL+EP+EDQRPL                            +FGN+ASELDNSL KEVS
Subjt:  EETIDNIP-QDHLDNQEPYLE---NPNLDRQTMGQVREKTLRELSEPDEDQRPLCI--------------------------NFGNRASELDNSLTKEVS

Query:  ELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN
        ELKSQMLNMTTLLTSFV G  +KV KCGVC LVGH NDKCP+++E+ N++R+YDPH NTYN+GWRDNPNLRWGNDN
Subjt:  ELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.3e-4064.54Show/hide
Query:  HLDNQEPYLENPNLDRQTM-----GQVREKTLRELSEPDEDQRPLCINFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGH
        +L NQEP L      R T+     G + +KT  E  E          +FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVC LVGH
Subjt:  HLDNQEPYLENPNLDRQTM-----GQVREKTLRELSEPDEDQRPLCINFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGH

Query:  PNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN
        PNDKCP ++E+ N++R+YDPHSNTYN+GWRDN NLRWGNDN
Subjt:  PNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN

TYK27733.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.3e-4050.53Show/hide
Query:  MGQVREKTLRELSEPDEDQRPLCI----------------------------------------------------------------------NFGNRA
        MG+VREKTLREL EPDEDQRP+CI                                                                      +FGNRA
Subjt:  MGQVREKTLRELSEPDEDQRPLCI----------------------------------------------------------------------NFGNRA

Query:  SELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN
        SELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +K  KCGVC LVGHPNDKC +++E+ NV+R+YDPH NT N+GWRDNPN  WGNDN
Subjt:  SELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN

TrEMBL top hitse value%identityAlignment
A0A5A7UAL2 Retrotransposon gag protein4.4e-4082.98Show/hide
Query:  NFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN
        +FGNRASELDNSLTKEVSELKSQM NMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDPH NTYN GWRDNPNLRWGNDN
Subjt:  NFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN

A0A5A7V668 Retrotransposon gag protein3.7e-4759.09Show/hide
Query:  EETIDNIP-QDHLDNQEPYLE---NPNLDRQTMGQVREKTLRELSEPDEDQRPLCI--------------------------NFGNRASELDNSLTKEVS
        E +I N+  Q+ L   EP L+   +PNL R+ MG+VREKTL+EL+EP+EDQRPL                            +FGN+ASELDNSL KEVS
Subjt:  EETIDNIP-QDHLDNQEPYLE---NPNLDRQTMGQVREKTLRELSEPDEDQRPLCI--------------------------NFGNRASELDNSLTKEVS

Query:  ELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN
        ELKSQMLNMTTLLTSFV G  +KV KCGVC LVGH NDKCP+++E+ N++R+YDPH NTYN+GWRDNPNLRWGNDN
Subjt:  ELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN

A0A5D3CB46 Retrotransposon gag protein2.6e-4064.54Show/hide
Query:  HLDNQEPYLENPNLDRQTM-----GQVREKTLRELSEPDEDQRPLCINFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGH
        +L NQEP L      R T+     G + +KT  E  E          +FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVC LVGH
Subjt:  HLDNQEPYLENPNLDRQTM-----GQVREKTLRELSEPDEDQRPLCINFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGH

Query:  PNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN
        PNDKCP ++E+ N++R+YDPHSNTYN+GWRDN NLRWGNDN
Subjt:  PNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN

A0A5D3CRR8 Retrotransposon gag protein4.4e-4058.06Show/hide
Query:  EETIDNIPQDHLDN----QEPYLENPNLDRQTM-----GQVREKTLRELSEPDEDQRPLCINFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGS
        +E   + P  H+ +    Q  Y +  + DR T+     G + +K   E  E          +F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  
Subjt:  EETIDNIPQDHLDN----QEPYLENPNLDRQTM-----GQVREKTLRELSEPDEDQRPLCINFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGS

Query:  VKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN
        +KV KCGVC LVGHPNDKCP+++E+ N++RKYDPH NTYN+GWRDNPNLRWGNDN
Subjt:  VKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN

A0A5D3DVN0 Retrotransposon gag protein2.6e-4050.53Show/hide
Query:  MGQVREKTLRELSEPDEDQRPLCI----------------------------------------------------------------------NFGNRA
        MG+VREKTLREL EPDEDQRP+CI                                                                      +FGNRA
Subjt:  MGQVREKTLRELSEPDEDQRPLCI----------------------------------------------------------------------NFGNRA

Query:  SELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN
        SELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +K  KCGVC LVGHPNDKC +++E+ NV+R+YDPH NT N+GWRDNPN  WGNDN
Subjt:  SELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAAGAAACCATTGATAATATTCCTCAAGACCATTTAGACAACCAAGAGCCTTATCTAGAAAACCCAAACCTTGATAGACAAACCATGGGGCAAGTTAGAGAGAA
AACCTTAAGAGAGCTTTCCGAGCCTGACGAGGACCAAAGGCCCCTCTGCATTAATTTTGGAAACAGAGCATCCGAGCTCGACAATTCATTAACTAAGGAGGTAAGTGAAC
TTAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGCGGGGTGTGCAGTCTAGTCGGACATCCTAATGAC
AAGTGCCCTGACTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGCCGGTTGGAGAGACAACCCTAATCTGAGATGGGGAAACGA
CAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAAGAAACCATTGATAATATTCCTCAAGACCATTTAGACAACCAAGAGCCTTATCTAGAAAACCCAAACCTTGATAGACAAACCATGGGGCAAGTTAGAGAGAA
AACCTTAAGAGAGCTTTCCGAGCCTGACGAGGACCAAAGGCCCCTCTGCATTAATTTTGGAAACAGAGCATCCGAGCTCGACAATTCATTAACTAAGGAGGTAAGTGAAC
TTAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGCGGGGTGTGCAGTCTAGTCGGACATCCTAATGAC
AAGTGCCCTGACTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGCCGGTTGGAGAGACAACCCTAATCTGAGATGGGGAAACGA
CAACTAA
Protein sequenceShow/hide protein sequence
MGEETIDNIPQDHLDNQEPYLENPNLDRQTMGQVREKTLRELSEPDEDQRPLCINFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPND
KCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDN