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PI0015604 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0015604
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr04:28118887..28119269
RNA-Seq ExpressionPI0015604
SyntenyPI0015604
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052859.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.9e-3275.89Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA--------EKKTTRSHRRGDLTNKDDHQRRQ
        MK+KESE VSDYIT+VQTVVNQLKRNG+T KD R+VEKILRSLTNDF+NVVCAIE+ KNLEEMTI EL          KK TR   RG LTNKDDHQRRQ
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA--------EKKTTRSHRRGDLTNKDDHQRRQ

Query:  GNVCTTQSRKRT
        GNVCTTQSRK+T
Subjt:  GNVCTTQSRKRT

KAA0060771.1 polyprotein [Cucumis melo var. makuwa]1.3e-2569.81Show/hide
Query:  SDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTI-----------DELAEKKTTRSHRRGDLTNKDDHQRRQGNVCTT
        +D + + Q VVNQLK NG+TLKDARVVEKI  SLTNDFENVVCA EESKNLEEMT             E  EKKTTR   RG +TNKDDHQRRQGNVCTT
Subjt:  SDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTI-----------DELAEKKTTRSHRRGDLTNKDDHQRRQGNVCTT

Query:  QSRKRT
        QSRKRT
Subjt:  QSRKRT

KAE8672005.1 hypothetical protein F3Y22_tig00111877pilonHSYRG00353 [Hibiscus syriacus]4.6e-2380Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRRG
        M MKESEGVSDYIT VQTVVNQLK NGETLKD+RVVEKILRSLT+DFENVVCAIEESK+LEE+TID LA        RRG
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRRG

KAE8732520.1 Detected protein of unknown function [Hibiscus syriacus]3.0e-2269.47Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRRGDLTNKDDHQRRQGNV
        MKMKESEGVSD ITRVQTVVNQLK  GETLKD+RVVEKILRSLT+DFENVVCAIEESK+LEE+TID+LA        R+    N+   +  Q NV
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRRGDLTNKDDHQRRQGNV

XP_038878101.1 uncharacterized protein LOC120070273 isoform X4 [Benincasa hispida]1.8e-2279.75Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRR
        MKMKESE VS YITRVQTVVNQLKRNGETL+DA+VVEKILRSLTNDF+NVVCAIEESK LEEMTID+LA        R+
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRR

TrEMBL top hitse value%identityAlignment
A0A2I0VED6 Uncharacterized protein2.5e-2286.96Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA
        MKMKESEGVSDYITRVQTVVNQLKRNGE L DARVVEKILRSLTN+FENVVCAIEESK+L  +T++ELA
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA

A0A5D3C1S7 Retrovirus-related Pol polyprotein from transposon TNT 1-949.1e-3375.89Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA--------EKKTTRSHRRGDLTNKDDHQRRQ
        MK+KESE VSDYIT+VQTVVNQLKRNG+T KD R+VEKILRSLTNDF+NVVCAIE+ KNLEEMTI EL          KK TR   RG LTNKDDHQRRQ
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA--------EKKTTRSHRRGDLTNKDDHQRRQ

Query:  GNVCTTQSRKRT
        GNVCTTQSRK+T
Subjt:  GNVCTTQSRKRT

A0A5D3CND8 Polyprotein6.3e-2669.81Show/hide
Query:  SDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTI-----------DELAEKKTTRSHRRGDLTNKDDHQRRQGNVCTT
        +D + + Q VVNQLK NG+TLKDARVVEKI  SLTNDFENVVCA EESKNLEEMT             E  EKKTTR   RG +TNKDDHQRRQGNVCTT
Subjt:  SDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTI-----------DELAEKKTTRSHRRGDLTNKDDHQRRQGNVCTT

Query:  QSRKRT
        QSRKRT
Subjt:  QSRKRT

A0A6A2XY19 Integrase catalytic domain-containing protein2.2e-2380Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRRG
        M MKESEGVSDYIT VQTVVNQLK NGETLKD+RVVEKILRSLT+DFENVVCAIEESK+LEE+TID LA        RRG
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRRG

A0A6A3CTC0 Integrase catalytic domain-containing protein1.5e-2269.47Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRRGDLTNKDDHQRRQGNV
        MKMKESEGVSD ITRVQTVVNQLK  GETLKD+RVVEKILRSLT+DFENVVCAIEESK+LEE+TID+LA        R+    N+   +  Q NV
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRRGDLTNKDDHQRRQGNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGAAGGAGTCAGAAGGAGTATCTGACTACATCACCCGAGTTCAAACGGTGGTTAACCAACTTAAACGCAATGGAGAAACCCTCAAAGATGCCAGGGTTGTGGA
GAAAATCCTTCGATCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATTGAGGAGTCAAAGAATTTGGAAGAAATGACTATTGATGAACTTGCAGAAAAAAAGACAA
CAAGAAGTCATAGAAGAGGCGACCTTACAAACAAAGATGACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTTGCAGTTTCAGTCACGA
CAAAGGTTATGGTCGTGGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGAAGGAGTCAGAAGGAGTATCTGACTACATCACCCGAGTTCAAACGGTGGTTAACCAACTTAAACGCAATGGAGAAACCCTCAAAGATGCCAGGGTTGTGGA
GAAAATCCTTCGATCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATTGAGGAGTCAAAGAATTTGGAAGAAATGACTATTGATGAACTTGCAGAAAAAAAGACAA
CAAGAAGTCATAGAAGAGGCGACCTTACAAACAAAGATGACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTTGCAGTTTCAGTCACGA
CAAAGGTTATGGTCGTGGAAATAA
Protein sequenceShow/hide protein sequence
MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRRGDLTNKDDHQRRQGNVCTTQSRKRTLQFQSR
QRLWSWK