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PI0015616 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0015616
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr04:19865411..19866305
RNA-Seq ExpressionPI0015616
SyntenyPI0015616
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833177.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]9.2e-5347.6Show/hide
Query:  MSDSEQP-FELDPEIERTFRGNRRRARQRQIRR-MENNRNA-----PPPQADLEPNA------------AYIAHDLDRPIRSYAAPNLYNFNPGIAFPVF
        MS+ + P F++DPEIERTFR   R+ +QR+  + +E N +A       PQA +  NA              +AHD +RP+R YA+PNLYNF PGI  P F
Subjt:  MSDSEQP-FELDPEIERTFRGNRRRARQRQIRR-MENNRNA-----PPPQADLEPNA------------AYIAHDLDRPIRSYAAPNLYNFNPGIAFPVF

Query:  GENARFEIKPVMLQMIQNAGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENA
          N RFE+KPVMLQM+Q AGQFGG  GEDPH H++SF  IC++F M G+  + +R  LFP +LRDEA++WA + E G++ TW +++EKFM+K+FPP  +A
Subjt:  GENARFEIKPVMLQMIQNAGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENA

Query:  RRRKALMSFQQRDRENLLDAWIHTTRLRR
        +RR+ +++F+Q+D E   +AW    RL R
Subjt:  RRRKALMSFQQRDRENLLDAWIHTTRLRR

XP_017233063.1 PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus]2.1e-4146.45Show/hide
Query:  FELDPEIERTFRGNRRRARQRQIRRME-------NNRNAPPPQADLEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMIQNA
        F  DPEIERTF  NRRR  QR+I++ +       NN + P     + P  A+I  D DR IR YAAP     N GI  P   +  +FE+KPVM QM+Q  
Subjt:  FELDPEIERTFRGNRRRARQRQIRRME-------NNRNAPPPQADLEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMIQNA

Query:  GQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDRENLLD
        GQF G P EDPH H+R F  I  SF   G+  + LR  LFP ++RD A+ W N+L  G V TW+ L EKF+ K+FPP+ NA+ R  + SFQQ+D E+L D
Subjt:  GQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDRENLLD

Query:  AWIHTTRLRRR
        AW     L R+
Subjt:  AWIHTTRLRRR

XP_017239618.1 PREDICTED: uncharacterized protein LOC108212402 [Daucus carota subsp. sativus]1.2e-3945.97Show/hide
Query:  FELDPEIERTFRGNRRRARQRQIRRME-------NNRNAPPPQADLEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMIQNA
        F  DPEIERTF  NRRR  QR+I++ +       NN + P     + P  A+I  D DR IR YAAP     N GI  P   +  +FE+KPVM QM+Q  
Subjt:  FELDPEIERTFRGNRRRARQRQIRRME-------NNRNAPPPQADLEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMIQNA

Query:  GQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDRENLLD
        GQF G P EDPH H+R F  I  SF   G+  + LR  LFP ++RD A+ W N+L  G V TW+ L EKF+ K+FPP+ NA+    + SFQQ+D E+L D
Subjt:  GQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDRENLLD

Query:  AWIHTTRLRRR
        AW     L R+
Subjt:  AWIHTTRLRRR

XP_030508936.1 uncharacterized protein LOC115723589 [Cannabis sativa]6.8e-4045.79Show/hide
Query:  MSDSEQPFEL---DPEIERTFRGNRRRARQRQIRRMENNRNAPPPQADLEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMI
        M++ E+  EL   DPEIERTFR  +RR  Q+  +R              E N   +A D  R IR YAAP     NPGI  P   +   FE+KPVM QM+
Subjt:  MSDSEQPFEL---DPEIERTFRGNRRRARQRQIRRMENNRNAPPPQADLEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMI

Query:  QNAGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDREN
        Q  GQFGG P EDPH HIRSF  +  SF + G+S E LR  LFP +LRD A+ W N L    V  W+ L EKF++K+FPP  NA+ R  +MSFQQ + E 
Subjt:  QNAGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDREN

Query:  LLDAWIHTTRLRRR
          DAW     L R+
Subjt:  LLDAWIHTTRLRRR

XP_038887458.1 uncharacterized protein LOC120077591 [Benincasa hispida]1.2e-4749.29Show/hide
Query:  SEQPFELDPEIERTF--RGNRRRARQRQIRRMENNRNAPPP--QADLEP--NAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMI
        ++  FE +PEI+ TF  R ++ RA +R+I   +NN N  P   Q    P  +  ++A D + PIR+YAAPNLY+F+PGI+ P+  ENARFEIKPVM+QMI
Subjt:  SEQPFELDPEIERTF--RGNRRRARQRQIRRMENNRNAPPP--QADLEP--NAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMI

Query:  QNAGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDREN
        QN  QF     E+PH H+  F  +C++F +PGI+P  +R  LFP TLRD+AKRWA++LE  ++ + DQL+E FMKKFFPP  N RRRK +++F++ D E 
Subjt:  QNAGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDREN

Query:  LLDAWIHTTRL
        L  AW+   RL
Subjt:  LLDAWIHTTRL

TrEMBL top hitse value%identityAlignment
A0A392NID4 Retrotrans_gag domain-containing protein (Fragment)3.0e-3341.26Show/hide
Query:  FELDPEIERTFRGNRRRARQRQ---IRRMENNRNAPPPQAD--------LEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQM
        +  DPEIERTFR  RR  R+     +   E   ++    AD         EP+   IA+D  R IR YAA +    N GI  P     A+FE KP+M QM
Subjt:  FELDPEIERTFRGNRRRARQRQ---IRRMENNRNAPPPQAD--------LEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQM

Query:  IQNAGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDRE
        +Q  GQF     EDPH H++ F  + ++F +PGI+ +  R  LFP +LRD  K W N+LE   +  W+ L EKF+ K+FPP +NA+ R  + SF+Q D E
Subjt:  IQNAGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDRE

Query:  NLLDAW
         L DAW
Subjt:  NLLDAW

A0A5A7V2U7 Putative disease resistance RPP13-like protein 13.2e-3568.81Show/hide
Query:  ENNRNAPPPQADLEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMIQNAGQFGGHPGEDPHEHIRSFYSICASFHMPGISPE
        +NN+  P  QA    N  Y+A D DRPIRSYA+PNLY+FNPGIA+P F EN RFEIK VMLQ+IQNAGQF  HP +DPH++IR+FYSICASFHMPGIS E
Subjt:  ENNRNAPPPQADLEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMIQNAGQFGGHPGEDPHEHIRSFYSICASFHMPGISPE

Query:  ELRFALFPL
        ELRF  F L
Subjt:  ELRFALFPL

A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129451.1e-3239.51Show/hide
Query:  DPEIERTFRGNRRR----ARQRQIRRMENNRNAPPPQADLEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMIQNAGQFGGH
        DP+IERTFR +RR     A   Q    +NN N          NA  +  + +R +R Y  P +   +  I  P    N  FEIKP  +QMIQ++ QF G 
Subjt:  DPEIERTFRGNRRR----ARQRQIRRMENNRNAPPPQADLEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMIQNAGQFGGH

Query:  PGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDRENLLDAWIHTT
        P +DP+ H+ +F  IC +F   G++ + +R  LFP +LRD+AK W N+L +G + TW+ L +KF+ KFFPP + A+ R  + SF Q D E+L +AW    
Subjt:  PGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDRENLLDAWIHTT

Query:  RLRRR
         L RR
Subjt:  RLRRR

A0A6J0ZYV0 uncharacterized protein LOC1104134133.9e-3340Show/hide
Query:  DPEIERTFRGNRRR----ARQRQIRRMENNRNAPPPQADLEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMIQNAGQFGGH
        DP+IERTFR +RR     A   Q    +NN N          NA  +  + +R +R YA P +   +  I  P    N  FEIKP  +QMIQ++ QF G 
Subjt:  DPEIERTFRGNRRR----ARQRQIRRMENNRNAPPPQADLEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMIQNAGQFGGH

Query:  PGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDRENLLDAWIHTT
        P +DP+ H+ +F  IC +F   G++ + +R  LFP +LRD+AK W N+L +G + TW+ L +KF+ KFFPP + A+ R  + SF Q D E+L +AW    
Subjt:  PGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDRENLLDAWIHTT

Query:  RLRRR
         L RR
Subjt:  RLRRR

U5CUI2 Retrotrans_gag domain-containing protein1.9e-3547.85Show/hide
Query:  NAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMIQNAGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEA
        N   +A D  R IR YAAP     NPGI  P   +  +FE+KPVM QM+Q  GQF G P EDPH H+RSF  +  SF + G+S E LR  LFP +LRD A
Subjt:  NAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMIQNAGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEA

Query:  KRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDRENLLDAWIHTTRLRRR
        + W N L    V  W+ L EKF++K+FPP  NA+ R  +MSFQQ + E+  DAW     L R+
Subjt:  KRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDRENLLDAWIHTTRLRRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGACAGCGAACAGCCATTCGAACTTGACCCTGAGATTGAGCGAACATTTCGGGGTAATCGGCGAAGAGCAAGGCAAAGACAAATTCGTAGAATGGAAAATAACAG
AAATGCTCCTCCGCCGCAAGCTGACCTAGAACCCAATGCCGCCTATATCGCACATGACTTGGACAGGCCAATTAGATCTTATGCGGCACCCAACCTTTATAACTTCAATC
CAGGAATCGCCTTTCCTGTATTTGGCGAGAACGCCAGGTTTGAAATCAAACCTGTTATGCTTCAGATGATTCAGAACGCTGGACAATTCGGCGGACATCCTGGGGAAGAT
CCACACGAGCATATAAGGAGTTTCTACTCCATCTGCGCTTCTTTCCACATGCCAGGCATCTCACCTGAAGAATTAAGATTCGCCCTCTTCCCGTTAACTCTGAGGGATGA
AGCGAAGAGGTGGGCAAATGCCCTGGAAGATGGCGACGTGGGAACATGGGATCAATTAATAGAAAAATTTATGAAGAAATTCTTCCCACCTCATGAAAATGCAAGAAGAA
GGAAGGCGCTTATGAGCTTCCAGCAGAGAGATAGAGAAAACCTACTTGATGCGTGGATACATACAACCAGATTAAGACGACGCTGGATACGATGGCCAGCAACAACGAAG
AACGGGATGAAGATGATTTTGGCAATCGCCGAGGAGGACGAGCAAAAGATGATGGTATGGATAGGAACGCCGTGGTGGCACTGCAGGGACAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGACAGCGAACAGCCATTCGAACTTGACCCTGAGATTGAGCGAACATTTCGGGGTAATCGGCGAAGAGCAAGGCAAAGACAAATTCGTAGAATGGAAAATAACAG
AAATGCTCCTCCGCCGCAAGCTGACCTAGAACCCAATGCCGCCTATATCGCACATGACTTGGACAGGCCAATTAGATCTTATGCGGCACCCAACCTTTATAACTTCAATC
CAGGAATCGCCTTTCCTGTATTTGGCGAGAACGCCAGGTTTGAAATCAAACCTGTTATGCTTCAGATGATTCAGAACGCTGGACAATTCGGCGGACATCCTGGGGAAGAT
CCACACGAGCATATAAGGAGTTTCTACTCCATCTGCGCTTCTTTCCACATGCCAGGCATCTCACCTGAAGAATTAAGATTCGCCCTCTTCCCGTTAACTCTGAGGGATGA
AGCGAAGAGGTGGGCAAATGCCCTGGAAGATGGCGACGTGGGAACATGGGATCAATTAATAGAAAAATTTATGAAGAAATTCTTCCCACCTCATGAAAATGCAAGAAGAA
GGAAGGCGCTTATGAGCTTCCAGCAGAGAGATAGAGAAAACCTACTTGATGCGTGGATACATACAACCAGATTAAGACGACGCTGGATACGATGGCCAGCAACAACGAAG
AACGGGATGAAGATGATTTTGGCAATCGCCGAGGAGGACGAGCAAAAGATGATGGTATGGATAGGAACGCCGTGGTGGCACTGCAGGGACAAATGA
Protein sequenceShow/hide protein sequence
MSDSEQPFELDPEIERTFRGNRRRARQRQIRRMENNRNAPPPQADLEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAFPVFGENARFEIKPVMLQMIQNAGQFGGHPGED
PHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGDVGTWDQLIEKFMKKFFPPHENARRRKALMSFQQRDRENLLDAWIHTTRLRRRWIRWPATTK
NGMKMILAIAEEDEQKMMVWIGTPWWHCRDK