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PI0015629 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0015629
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr04:12951421..12955049
RNA-Seq ExpressionPI0015629
SyntenyPI0015629
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050861.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.7e-2462.5Show/hide
Query:  KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVIPNNVPTTSQNVRRFTRHTKLPSYLRD------------NV
        +L+T AIF FA IP NEA TSTLAKEVVATPTN N            NQAT  SQA  VIPNNVPTTSQ++R  TR TK PSYLR+            NV
Subjt:  KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVIPNNVPTTSQNVRRFTRHTKLPSYLRD------------NV

Query:  SATLTKFPIQKFKSYNKLSSSYKKFLLN
        SA  TKFPI K  SYNKLSSSYKKFLLN
Subjt:  SATLTKFPIQKFKSYNKLSSSYKKFLLN

TYK08491.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.7e-2462.5Show/hide
Query:  KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVIPNNVPTTSQNVRRFTRHTKLPSYLRD------------NV
        +L+T AIF FA IP NEA TSTLAKEVVATPTN N            NQAT  SQA  VIPNNVPTTSQ++R  TR TK PSYLR+            NV
Subjt:  KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVIPNNVPTTSQNVRRFTRHTKLPSYLRD------------NV

Query:  SATLTKFPIQKFKSYNKLSSSYKKFLLN
        SA  TKFPI K  SYNKLSSSYKKFLLN
Subjt:  SATLTKFPIQKFKSYNKLSSSYKKFLLN

TrEMBL top hitse value%identityAlignment
A0A0A0LAR9 Uncharacterized protein4.1e-4857.14Show/hide
Query:  MLQSHLAKA----KADNDSTSTPHVVVEKPLALDLSTPSILNIAVNFHVQNTVTSTCYIEAVVTKLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN-
        MLQSHLAKA    K +NDS STPHVV  + LALDLSTPSILN AVNFH QNTVT+T Y+EAVVTK++T AIF FA IP NEAGTSTLAKEVVATPTNNN 
Subjt:  MLQSHLAKA----KADNDSTSTPHVVVEKPLALDLSTPSILNIAVNFHVQNTVTSTCYIEAVVTKLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN-

Query:  -----------NQATLGSQAPIVIPNNVPTTSQNVRRFTRHTKLPSYL---------------RDNVSATLTKFPIQKFKSYNKLSSSYKKFLLN-----
                   NQATL SQA IVIPNNVPTTSQNVRR TR   LP++L                 NV    TK PIQKF SYNKLSSSYKKFLL      
Subjt:  -----------NQATLGSQAPIVIPNNVPTTSQNVRRFTRHTKLPSYL---------------RDNVSATLTKFPIQKFKSYNKLSSSYKKFLLN-----

Query:  -----------------------------KKHDGVEKAGGRKRNS
                                     KK D VEKAGGR R +
Subjt:  -----------------------------KKHDGVEKAGGRKRNS

A0A5A7UBB2 Retrovirus-related Pol polyprotein from transposon TNT 1-948.3e-2562.5Show/hide
Query:  KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVIPNNVPTTSQNVRRFTRHTKLPSYLRD------------NV
        +L+T AIF FA IP NEA TSTLAKEVVATPTN N            NQAT  SQA  VIPNNVPTTSQ++R  TR TK PSYLR+            NV
Subjt:  KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVIPNNVPTTSQNVRRFTRHTKLPSYLRD------------NV

Query:  SATLTKFPIQKFKSYNKLSSSYKKFLLN
        SA  TKFPI K  SYNKLSSSYKKFLLN
Subjt:  SATLTKFPIQKFKSYNKLSSSYKKFLLN

A0A5D3C9G2 Retrovirus-related Pol polyprotein from transposon TNT 1-948.3e-2562.5Show/hide
Query:  KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVIPNNVPTTSQNVRRFTRHTKLPSYLRD------------NV
        +L+T AIF FA IP NEA TSTLAKEVVATPTN N            NQAT  SQA  VIPNNVPTTSQ++R  TR TK PSYLR+            NV
Subjt:  KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVIPNNVPTTSQNVRRFTRHTKLPSYLRD------------NV

Query:  SATLTKFPIQKFKSYNKLSSSYKKFLLN
        SA  TKFPI K  SYNKLSSSYKKFLLN
Subjt:  SATLTKFPIQKFKSYNKLSSSYKKFLLN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCAGTCACATCTAGCAAAGGCCAAGGCCGATAATGATTCTACCTCTACTCCTCATGTAGTAGTTGAGAAGCCCCTTGCTCTAGATTTGTCTACTCCCTCCATCTT
GAATATTGCTGTTAATTTTCATGTTCAAAATACTGTTACTAGCACTTGTTATATTGAAGCAGTAGTTACAAAACTTATTACCCTTGCCATTTTCGTGTTTGCGAGCATTC
CTCCTAATGAAGCTGGGACTAGTACATTAGCCAAAGAAGTCGTTGCCACTCCAACCAACAACAATAATCAAGCAACACTTGGCAGTCAAGCACCCATTGTGATTCCAAAC
AATGTGCCAACCACTTCTCAAAATGTTAGACGGTTTACTCGGCATACCAAACTACCTTCTTACCTTCGTGACAACGTGTCTGCTACTCTTACAAAGTTCCCCATTCAGAA
GTTCAAGTCTTATAACAAGTTGTCCTCAAGTTATAAGAAATTCTTACTCAATAAGAAACACGATGGTGTGGAGAAAGCTGGTGGCAGAAAGAGAAATAGTGGTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCAGTCACATCTAGCAAAGGCCAAGGCCGATAATGATTCTACCTCTACTCCTCATGTAGTAGTTGAGAAGCCCCTTGCTCTAGATTTGTCTACTCCCTCCATCTT
GAATATTGCTGTTAATTTTCATGTTCAAAATACTGTTACTAGCACTTGTTATATTGAAGCAGTAGTTACAAAACTTATTACCCTTGCCATTTTCGTGTTTGCGAGCATTC
CTCCTAATGAAGCTGGGACTAGTACATTAGCCAAAGAAGTCGTTGCCACTCCAACCAACAACAATAATCAAGCAACACTTGGCAGTCAAGCACCCATTGTGATTCCAAAC
AATGTGCCAACCACTTCTCAAAATGTTAGACGGTTTACTCGGCATACCAAACTACCTTCTTACCTTCGTGACAACGTGTCTGCTACTCTTACAAAGTTCCCCATTCAGAA
GTTCAAGTCTTATAACAAGTTGTCCTCAAGTTATAAGAAATTCTTACTCAATAAGAAACACGATGGTGTGGAGAAAGCTGGTGGCAGAAAGAGAAATAGTGGTGGATGA
Protein sequenceShow/hide protein sequence
MLQSHLAKAKADNDSTSTPHVVVEKPLALDLSTPSILNIAVNFHVQNTVTSTCYIEAVVTKLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNNNQATLGSQAPIVIPN
NVPTTSQNVRRFTRHTKLPSYLRDNVSATLTKFPIQKFKSYNKLSSSYKKFLLNKKHDGVEKAGGRKRNSGG