CuGenDBv2

Gene ID	PI0015655
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty3/gypsy retrotransposon protein
Genome location	chr10:5165235..5165639
RNA-Seq Expression	PI0015655
Synteny	PI0015655
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0030154 - cell differentiation (biological process) GO:0005634 - nucleus (cellular component) GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036024.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]

6.8e-33

60.16

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Query:  VQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEVEEDQEL
        VQKWRHY+LGR+FTIISDQ+          VQSQFQ+WL KLLGYDFEILYQPGL+NKA +ALS++EQT    +EL +M   G++D E++ KEVE+D EL
Subjt:  VQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEVEEDQEL

Query:  QELIEKVKQNPEAHPKYKWDNDRLWYKG
        QE+I+ +K+N +   KYKW+N+RL YKG
Subjt:  QELIEKVKQNPEAHPKYKWDNDRLWYKG

KAA0054754.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]

3.1e-33

59.7

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Query:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV
        MVVVL+VQKWRHY+LGR+FTI+SDQK          VQ QFQKWL  LLGYDFEILYQPGLQNKAA+ALS+++ T     EL TM   G VD E + KEV
Subjt:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV

Query:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYKG
        E+D +LQ+++E++++ P    KYKW+N RL YKG
Subjt:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYKG

KAE8637370.1 hypothetical protein CSA_004463 [Cucumis sativus]

8.9e-33

59.4

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Query:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV
        M VVL+VQKWRHY+LGR+FTIISDQK          VQ QFQKWL KLLGYDFEILYQPGLQNKAA+ALS++E      +E+ ++   G+VD E+I KEV
Subjt:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV

Query:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYK
         +D+ELQ+ I+++KQNPE   K+ W+N +L+YK
Subjt:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYK

KGN62557.2 hypothetical protein Csa_018739 [Cucumis sativus]

2.3e-33

59.4

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Query:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV
        M VVL+VQKWRHY+LGR+FTIISDQ+          VQ QFQKWL KLLGYDFEILYQPGLQNKAA+ALS++EQ     +E+  M   G+V+ E++ KEV
Subjt:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV

Query:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYK
        E D+EL+ +IE++KQNP+   K++W N  LWYK
Subjt:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYK

TYK23846.1 T32E20.30 [Cucumis melo var. makuwa]

1.2e-32

58.96

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Query:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV
        MVVV AVQKWRHY+LGR+FTII DQ+          VQ QFQKWL K+LGYDFEILYQPGLQNKAA+ LS++EQT     +L  M   G++D E++ KEV
Subjt:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV

Query:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYKG
        E+D ELQ++I+++K+ PE   +Y+WDN+RL YKG
Subjt:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYKG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SXG0 Transposon Ty3-G Gag-Pol polyprotein

3.3e-33

60.16

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Query:  VQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEVEEDQEL
        VQKWRHY+LGR+FTIISDQ+          VQSQFQ+WL KLLGYDFEILYQPGL+NKA +ALS++EQT    +EL +M   G++D E++ KEVE+D EL
Subjt:  VQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEVEEDQEL

Query:  QELIEKVKQNPEAHPKYKWDNDRLWYKG
        QE+I+ +K+N +   KYKW+N+RL YKG
Subjt:  QELIEKVKQNPEAHPKYKWDNDRLWYKG

A0A5A7UAC5 T32E20.30

2.8e-32

58.21

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Query:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV
        MVVV AVQKWRHY+LGR+FTII DQ+          VQ QFQKWL K+LGYDFEILYQPG QNKAA+ LS++EQT     +L  M   G++D E++ KEV
Subjt:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV

Query:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYKG
        E+D ELQ++I+++K+ PE   +Y+WDN+RL YKG
Subjt:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYKG

A0A5A7UHY0 Transposon Ty3-G Gag-Pol polyprotein

1.5e-33

59.7

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Query:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV
        MVVVL+VQKWRHY+LGR+FTI+SDQK          VQ QFQKWL  LLGYDFEILYQPGLQNKAA+ALS+++ T     EL TM   G VD E + KEV
Subjt:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV

Query:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYKG
        E+D +LQ+++E++++ P    KYKW+N RL YKG
Subjt:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYKG

A0A5D3CPQ1 Transposon Ty3-G Gag-Pol polyprotein

9.6e-33

59.7

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Query:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV
        MVVVL+VQKWRHY+LGRRFTI+SDQK          VQ QFQKWL KLLGYDFEI+YQPGLQNKAA+ALS+VE      +EL TM   G+VD E++ KEV
Subjt:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV

Query:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYKG
        E+D+ELQ++ ++++ NP    KY   N +L YKG
Subjt:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYKG

A0A5D3DJK4 T32E20.30

5.6e-33

58.96

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Query:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV
        MVVV AVQKWRHY+LGR+FTII DQ+          VQ QFQKWL K+LGYDFEILYQPGLQNKAA+ LS++EQT     +L  M   G++D E++ KEV
Subjt:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEV

Query:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYKG
        E+D ELQ++I+++K+ PE   +Y+WDN+RL YKG
Subjt:  EEDQELQELIEKVKQNPEAHPKYKWDNDRLWYKG

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

8.2e-05

38.27

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Query:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALS--KVEQTKESE
        + +V A + +RHY+LGR F I SD +            S+  +W  KL  +DF+I Y  G +N  A+ALS  K+E+T  SE
Subjt:  MVVVLAVQKWRHYVLGRRFTIISDQK----------VQSQFQKWLNKLLGYDFEILYQPGLQNKAANALS--KVEQTKESE

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.8e-04

34.57

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Query:  MVVVLAVQKWRHYVLGRRFTIISD----------QKVQSQFQKWLNKLLGYDFEILYQPGLQNKAANALS--KVEQTKESE
        + +V A + +RHY+LGR+F I SD          ++  ++ ++W  +L  Y F+I Y  G +N  A+ALS  K+E+   SE
Subjt:  MVVVLAVQKWRHYVLGRRFTIISD----------QKVQSQFQKWLNKLLGYDFEILYQPGLQNKAANALS--KVEQTKESE

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTAGTGGTGCTTGCAGTACAAAAATGGAGGCATTATGTGCTAGGAAGACGCTTCACGATCATATCTGATCAGAAGGTACAATCCCAGTTTCAGAAATGGCTAAACAA
GTTGTTGGGTTACGACTTTGAAATCTTGTACCAACCTGGGTTGCAGAACAAGGCTGCAAATGCTCTATCAAAAGTGGAACAAACTAAAGAAAGTGAGATGGAATTGGCTA
CCATGTTTGCACCGGGGCTGGTTGATACAGAAATGATTTTAAAGGAGGTAGAAGAAGATCAAGAGTTGCAGGAATTGATTGAGAAAGTAAAACAAAACCCAGAGGCTCAC
CCGAAATACAAATGGGATAATGATAGACTGTGGTACAAGGGCTGA

mRNA sequence

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Protein sequence

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MVVVLAVQKWRHYVLGRRFTIISDQKVQSQFQKWLNKLLGYDFEILYQPGLQNKAANALSKVEQTKESEMELATMFAPGLVDTEMILKEVEEDQELQELIEKVKQNPEAH
PKYKWDNDRLWYKG

PI0015655 (gene) of Melon (PI 482460) v1 genome